View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19774_high_1 (Length: 1141)
Name: NF19774_high_1
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_high_1 |
 | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 993; Significance: 0; HSPs: 21)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 993; E-Value: 0
Query Start/End: Original strand, 12 - 1124
Target Start/End: Original strand, 5315458 - 5316568
Alignment:
| Q |
12 |
agcagagacatcacttggagtggttactgtaagagcattcaacatggtagatggattttacaaaaactacttaaaacttgtggacaaagatgcttcattg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315458 |
agcagagacatcacttggagtggttactgtaagagcattcaacatggtagatggattttacaaaaactacttaaaacttgtggacaaagatgcttcattg |
5315557 |
T |
|
| Q |
112 |
ttctttcattctaatgtgggaatggaatggatggttataaggattgaagcacttcaaaatttaactctcatcaccgcagctttgttgctaattcttgttc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5315558 |
ttctttcattctaatgtgggaatggaatggatggttataaggattgaagcacttcaaaatttaactatcatcaccgcagctttgttgctaattcttgttc |
5315657 |
T |
|
| Q |
212 |
ctcgtggatatgtgtccccaggtaataatgttgcataagagatcatctgcgatgacatgattttgctaatactgacaattctcggcaattctcctgttct |
311 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315658 |
ctcgtggatacgtgtcgccaggtaataatgttgcataagagatcatatgtgatgacatgattttgctaatactgacaattctcggcaattctcctgttct |
5315757 |
T |
|
| Q |
312 |
ttgtctccaggacttgtgggactgtctctttattatgctttaattttgacatcagcccaaatattttggactcgatggttttccaacttatcgaactaca |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315758 |
--gtctccaggacttgtgggactgtctctttattatgctttaattttgacatcagccccaatattttggactcgatggttttccaacttatcgaactaca |
5315855 |
T |
|
| Q |
412 |
ttatctctgttgaaagaatcaatcagttcattcacattccatttgagcctcctgccattgtggagaataatcgacccccttcttcatggccttccaaggg |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5315856 |
ttatctctgttgaaagaatcaatcagttcattcacgttccatttgagcctcctgccattgtggaggataatcgacccccttcttcatggccttccaaggg |
5315955 |
T |
|
| Q |
512 |
taggattgatgttcaaggattagaggtaacattgcatttatgtctttattttgcactccactttcaagaaagttctataatttctgttttatgtacattg |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315956 |
taggattgatgttcaaggattagaggtaacattgcatttatgtctttattttgtactccactttcaagaaagttctataatttctgttttatgtacattg |
5316055 |
T |
|
| Q |
612 |
gtttcaggttagatatcgtcctaacgctccattagtcctcaagggaatcacttgtacatttcaagaagggagtagggtgggagttgttggaaggactggt |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5316056 |
gtttcaggttagatatcgtcctaacgctccattagtcctcaagggaatcacttgtacatttcaagaagggagtagggtgggagttgttggaaggactggt |
5316155 |
T |
|
| Q |
712 |
actggaaaaagtacgcttataagtgctttgtttcgcttagttgagccttcaaaaggtgctattctcatagatagaataaacatatgctcaatcgggttgc |
811 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
5316156 |
actggaaaaagtacacttataagtgccttgtttggcttagttgagccttcaaaaggtgatattctcatagatgggataaacatatgctcaatcgggttga |
5316255 |
T |
|
| Q |
812 |
aggatttgagaactaagctaagcatcattcctcaagaaccaactcttttcaagggcagcattaggacaaacctcgaccctctaggcctgtactcagatga |
911 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5316256 |
aggatttgagaactaagctaagcatcattcctcaagaaccaactcttttcaagggcagcattaggacaaacctcgaccctctaggcctgtactcagatga |
5316355 |
T |
|
| Q |
912 |
tgaaatatggaaggtgaattgactaactttaaaagaagttgaattttacatgagccattcaataaaataatatttgatttctatatttaggctgtnnnnn |
1011 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||| |
|
|
| T |
5316356 |
tgaaatatggaaggtgaattgactaactttaaaagaagttgaattttacatgagccacacaataatataatatttgatttgtatatttaggctgtaaaaa |
5316455 |
T |
|
| Q |
1012 |
nntgtcagcttaaggaaacaatcagcaagctaccaagtctcttagactcttctggtaagtctttcaacattaaggaaactatataatcattgaagctgca |
1111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5316456 |
aatgtcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaagtctttcaacattaaggaaactatataatcattgaagctgca |
5316555 |
T |
|
| Q |
1112 |
gctgctcattttt |
1124 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
5316556 |
gcttctcattttt |
5316568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 605 - 1114
Target Start/End: Complemental strand, 5287778 - 5287270
Alignment:
| Q |
605 |
tacattggtttcaggttagatatcgtcctaacgctccattagtcctcaagggaatcacttgtacatttcaagaagggagtagggtgggagttgttggaag |
704 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||| || |||||||||| |||||||||| ||||||| |||||||| |||||||||||||| |
|
|
| T |
5287778 |
tacattggtttcagattagatatcgtcctaatagtccattagtacttaagggaatcatttgtacatttaaagaaggaagtagggtaggagttgttggaag |
5287679 |
T |
|
| Q |
705 |
gactggtactggaaaaagtacgcttataagtgctttgtttcgcttagttgagccttcaaaaggtgctattctcatagatagaataaacatatgctcaatc |
804 |
Q |
| |
|
|||||| | ||| ||||| || || || ||||||||||||||||||||||||||||||| ||||| |||||| |||||| | | ||||||||||||||| |
|
|
| T |
5287678 |
gactggaagtgggaaaagcacactgattagtgctttgtttcgcttagttgagccttcaagaggtgatattcttatagatggggttaacatatgctcaatc |
5287579 |
T |
|
| Q |
805 |
gggttgcaggatttgagaactaagctaagcatcattcctcaagaaccaactcttttcaagggcagcattaggacaaacctcgaccctctaggcctgtact |
904 |
Q |
| |
|
|| ||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| | |
|
|
| T |
5287578 |
ggattgaaggatttgagaacaaagctaagcatcattcctcaagaaccaacacttttcaagggcagcattagaacaaacctggaccctctaggcctgtatt |
5287479 |
T |
|
| Q |
905 |
cagatgatgaaatatggaaggtgaattgactaactttaaaagaagttgaattttacatgagccattcaataaaataatatttgatttctatatttaggct |
1004 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| | |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
5287478 |
cagatgatgaaatatggaaggtgaattaac-aactttaattgcagttgaattttacatgagccattcaataaaataaaatttgatttgtatatttaggct |
5287380 |
T |
|
| Q |
1005 |
gtnnnnnnntgtcagcttaaggaaacaatcagcaagctaccaagtctcttagactcttctggtaagtctttcaacattaaggaaactatataatcattga |
1104 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5287379 |
gtagaaaaatgtcagcttaaggaaacaatcagcaagctaccaaatctcttagactcttctggtaagtctttcaacattaaggaaactatataatcattga |
5287280 |
T |
|
| Q |
1105 |
agctgcagct |
1114 |
Q |
| |
|
|||| ||||| |
|
|
| T |
5287279 |
agctacagct |
5287270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 606 - 930
Target Start/End: Complemental strand, 5280074 - 5279750
Alignment:
| Q |
606 |
acattggtttcaggttagatatcgtcctaacgctccattagtcctcaagggaatcacttgtacatttcaagaagggagtagggtgggagttgttggaagg |
705 |
Q |
| |
|
||||||||||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
5280074 |
acattggtttcagattagatatcgccctaatgctccattagtccttaagggaatcacttgtacttttcaagaaggaagtagggtaggagttgttggaagg |
5279975 |
T |
|
| Q |
706 |
actggtactggaaaaagtacgcttataagtgctttgtttcgcttagttgagccttcaaaaggtgctattctcatagatagaataaacatatgctcaatcg |
805 |
Q |
| |
|
||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| |||| |||||||||||||||| |
|
|
| T |
5279974 |
actggaagcggaaaaagtacacttataagtgctttgtttcgcttagttgagccttcaaaaggtgatattcttattgatggaattaacatatgctcaatcg |
5279875 |
T |
|
| Q |
806 |
ggttgcaggatttgagaactaagctaagcatcattcctcaagaaccaactcttttcaagggcagcattaggacaaacctcgaccctctaggcctgtactc |
905 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
5279874 |
ggttaaaggatttgagaacaaagctaagcatcattccgcaagaaccaacacttttcaaaggcagcattaggacaaatctggaccctctaggcctgtactc |
5279775 |
T |
|
| Q |
906 |
agatgatgaaatatggaaggtgaat |
930 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5279774 |
agatgatgaaatatggaaggtgaat |
5279750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 595 - 930
Target Start/End: Original strand, 15127939 - 15128274
Alignment:
| Q |
595 |
ctgttttatgtacattggtttcaggttagatatcgtcctaacgctccattagtcctcaagggaatcacttgtacatttcaagaagggagtagggtgggag |
694 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| ||| |||||||| |||| |
|
|
| T |
15127939 |
ctgttttttgtacattggtttcaggttcgatatcgtcctaatgctccattagtccttaagggaatcacttgtacatttaaaggaggaagtagggtcggag |
15128038 |
T |
|
| Q |
695 |
ttgttggaaggactggtactggaaaaagtacgcttataagtgctttgtttcgcttagttgagccttcaaaaggtgctattctcatagatagaataaacat |
794 |
Q |
| |
|
||||||||||||| || | |||||||||||| || || ||||||||||||||||||||||||||||||| ||||| |||||| || ||| | |||||||| |
|
|
| T |
15128039 |
ttgttggaaggaccggaagtggaaaaagtacactgattagtgctttgtttcgcttagttgagccttcaagaggtgatattcttattgatgggataaacat |
15128138 |
T |
|
| Q |
795 |
atgctcaatcgggttgcaggatttgagaactaagctaagcatcattcctcaagaaccaactcttttcaagggcagcattaggacaaacctcgaccctcta |
894 |
Q |
| |
|
|||||||| || ||| |||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
15128139 |
ttgctcaatgggattgaaggatttgagaatgaagctaagcataatccctcaagaaccaactcttttcaagggcagcattagaacaaacctggaccctcta |
15128238 |
T |
|
| Q |
895 |
ggcctgtactcagatgatgaaatatggaaggtgaat |
930 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
15128239 |
ggcctgtactcagatgatgaaatatggaaggtgaat |
15128274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 586 - 940
Target Start/End: Complemental strand, 14947106 - 14946753
Alignment:
| Q |
586 |
ctataatttctgttttatgtacattggtttcaggttagatatcgtcctaacgctccattagtcctcaagggaatcacttgtacatttcaagaagggagta |
685 |
Q |
| |
|
|||||||||||||||| ||||| | | |||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||||| ||| ||| |||| |
|
|
| T |
14947106 |
ctataatttctgtttt-tgtacttcgatttcagattagataccgtcctaatgctccattagtccttaagggaatcacttgtacatttaaaggaggaagta |
14947008 |
T |
|
| Q |
686 |
gggtgggagttgttggaaggactggtactggaaaaagtacgcttataagtgctttgtttcgcttagttgagccttcaaaaggtgctattctcatagatag |
785 |
Q |
| |
|
|||| ||||||||||||||||| || | |||||||||||| || || || |||||||||||||||||||||||||||| |||| |||||| || ||| | |
|
|
| T |
14947007 |
gggtcggagttgttggaaggacgggaagtggaaaaagtacactgattagcgctttgtttcgcttagttgagccttcaagcggtgatattcttattgatgg |
14946908 |
T |
|
| Q |
786 |
aataaacatatgctcaatcgggttgcaggatttgagaactaagctaagcatcattcctcaagaaccaactcttttcaagggcagcattaggacaaacctc |
885 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||||||| | ||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14946907 |
gataaacatttgctcaatggggttgaaggatttgagaatgaggctaagcataatccctcaagaaccaactcttttcaagggcagcattagaacaaacctg |
14946808 |
T |
|
| Q |
886 |
gaccctctaggcctgtactcagatgatgaaatatggaaggtgaattgactaactt |
940 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||| |||||||| |
|
|
| T |
14946807 |
gaccctctaggcctgtactcagatgatgaaatatggaatgtaaatgaactaactt |
14946753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 608 - 928
Target Start/End: Original strand, 5309378 - 5309698
Alignment:
| Q |
608 |
attggtttcaggttagatatcgtcctaacgctccattagtcctcaagggaatcacttgtacatttcaagaagggagtagggtgggagttgttggaaggac |
707 |
Q |
| |
|
||||||||||| ||||||||||||| || |||||||||||| ||||||||||||||||| | | ||||||| ||||||| ||||||||||||||||| |
|
|
| T |
5309378 |
attggtttcagattagatatcgtcccaatagtccattagtccttaagggaatcacttgtacttctaaagaaggaagtagggcaggagttgttggaaggac |
5309477 |
T |
|
| Q |
708 |
tggtactggaaaaagtacgcttataagtgctttgtttcgcttagttgagccttcaaaaggtgctattctcatagatagaataaacatatgctcaatcggg |
807 |
Q |
| |
|
||| | |||||||||||| || || |||||||||||||||||||||||||| |||| ||||| ||||||||||||| | || ||||||||||||||||| |
|
|
| T |
5309478 |
tggaagtggaaaaagtacactgattagtgctttgtttcgcttagttgagccatcaagaggtgatattctcatagatgggattaacatatgctcaatcgga |
5309577 |
T |
|
| Q |
808 |
ttgcaggatttgagaactaagctaagcatcattcctcaagaaccaactcttttcaagggcagcattaggacaaacctcgaccctctaggcctgtactcag |
907 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| | ||||||||| || |||||||||||| |||||| |
|
|
| T |
5309578 |
ttgagggatttgagaacgaagctaagcatcattccgcaagaaccaacacttttcaagggaagcatcaagacaaacctggatcctctaggcctgcactcag |
5309677 |
T |
|
| Q |
908 |
atgatgaaatatggaaggtga |
928 |
Q |
| |
|
| |||||||||||||| |||| |
|
|
| T |
5309678 |
acgatgaaatatggaaagtga |
5309698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 5308485 - 5308709
Alignment:
| Q |
16 |
gagacatcacttggagtggttactgtaagagcattcaacatggtagatggattttacaaaaactacttaaaacttgtggacaaagatgcttcattgttct |
115 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5308485 |
gagacatcacatggagtggttactataagagcattcaacatggtagatagattttacaaaaattacttaaaacttgtggactcagatgcttcattgttct |
5308584 |
T |
|
| Q |
116 |
ttcattctaatgtgggaatggaatggatggttataaggattgaagcacttcaaaatttaactctcatcaccgcagctttgttgctaattcttgttcctcg |
215 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| |||||||||||||| |||||||| ||||| ||||||| |||||||||||||| ||||| ||||| | |
|
|
| T |
5308585 |
ttcattctaatgtggccatggaatgggtggttttaaggattgaagcaattcaaaatataactgtcatcactgcagctttgttgcttattctacttccttg |
5308684 |
T |
|
| Q |
216 |
tggatatgtgtccccaggtaataat |
240 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
5308685 |
tggatatgtgtccccaggtagtaat |
5308709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 145; E-Value: 1e-75
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 5280864 - 5280640
Alignment:
| Q |
16 |
gagacatcacttggagtggttactgtaagagcattcaacatggtagatggattttacaaaaactacttaaaacttgtggacaaagatgcttcattgttct |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5280864 |
gagacatcacttggagtggttactgtaagagcattcaacatggtagacagatttttcaaaaactacttaaaacttgtggacacagatgcttcattgttct |
5280765 |
T |
|
| Q |
116 |
ttcattctaatgtgggaatggaatggatggttataaggattgaagcacttcaaaatttaactctcatcaccgcagctttgttgctaattcttgttcctcg |
215 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| || ||| ||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
5280764 |
ttcattctaatgtggcgatgcaatggatggttttaaggattgaagcacttcaaaacttgactgtcatcacagcagctttgttgcttattctacatcctca |
5280665 |
T |
|
| Q |
216 |
tggatatgtgtccccaggtaataat |
240 |
Q |
| |
|
|||||||| || |||||||||||| |
|
|
| T |
5280664 |
gggatatgtatcaccaggtaataat |
5280640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 5288877 - 5288653
Alignment:
| Q |
16 |
gagacatcacttggagtggttactgtaagagcattcaacatggtagatggattttacaaaaactacttaaaacttgtggacaaagatgcttcattgttct |
115 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
5288877 |
gagacatcacttggagtagttacagtaagatcattcaacatggtagacagatttttcaaaaactacttgaaacttgtggacacagatgcttcattgttct |
5288778 |
T |
|
| Q |
116 |
ttcattctaatgtgggaatggaatggatggttataaggattgaagcacttcaaaatttaactctcatcaccgcagctttgttgctaattcttgttcctcg |
215 |
Q |
| |
|
||||||| |||| || ||||||||| ||||| |||||||||||||||||||||| || ||| ||||||| |||||| | ||||| ||||| |||||| |
|
|
| T |
5288777 |
ttcattcaaatggggccatggaatgggtggttttaaggattgaagcacttcaaaacttgactgtcatcactgcagctcttttgcttattctacttcctca |
5288678 |
T |
|
| Q |
216 |
tggatatgtgtccccaggtaataat |
240 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
5288677 |
gggatatgtatccccaggtaataat |
5288653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 14948100 - 14947878
Alignment:
| Q |
16 |
gagacatcacttggagtggttactgtaagagcattcaacatggtagatggattttacaaaaactacttaaaacttgtggacaaagatgcttcattgttct |
115 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14948100 |
gagacatcgcttggagtagttactgtaagagcatttggcatggtagacagatttttcaaaaactacttaaaacttgtggacacagatgcttcattgttct |
14948001 |
T |
|
| Q |
116 |
ttcattctaatgtgggaatggaatggatggttataaggattgaagcacttcaaaatttaactctcatcaccgcagctttgttgctaattcttgttcctcg |
215 |
Q |
| |
|
||||||||||||||| |||||||||| | ||| ||||| |||||||||||||||| || ||| ||||||| ||||||||| || | ||||| ||||||| |
|
|
| T |
14948000 |
ttcattctaatgtggcaatggaatgggtagttgtaagggttgaagcacttcaaaacttgactgtcatcactgcagctttgctgattattctacttcctcg |
14947901 |
T |
|
| Q |
216 |
tggatatgtgtccccaggtaata |
238 |
Q |
| |
|
|||||||| || |||||||||| |
|
|
| T |
14947900 |
gggatatgtatcgccaggtaata |
14947878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 15127251 - 15127472
Alignment:
| Q |
16 |
gagacatcacttggagtggttactgtaagagcattcaacatggtagatggattttacaaaaactacttaaaacttgtggacaaagatgcttcattgttct |
115 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
15127251 |
gagacatcacttggagtggttaccgtacgagcattcaacatggtagacagatttttcaaaaactacttaaaacttgtggatacagatgcttcattgttct |
15127350 |
T |
|
| Q |
116 |
ttcattctaatgtgggaatggaatggatggttataaggattgaagcacttcaaaatttaactctcatcaccgcagctttgttgctaattcttgttcctcg |
215 |
Q |
| |
|
||||||| ||||||| |||||||||| | ||| |||||||||||||||||| |||||| ||| ||||||| ||||||||| | || ||||| |||||| |
|
|
| T |
15127351 |
ttcattccaatgtggcaatggaatggttagttttaaggattgaagcacttctaaatttgactgtcatcactgcagctttgctactcattctacttcctca |
15127450 |
T |
|
| Q |
216 |
tggatatgtgtccccaggtaat |
237 |
Q |
| |
|
||||| | |||||||||||| |
|
|
| T |
15127451 |
aagatatctatccccaggtaat |
15127472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 319 - 548
Target Start/End: Original strand, 5309054 - 5309283
Alignment:
| Q |
319 |
caggacttgtgggactgtctctttattatgctttaattttgacatcagcccaaatattttggactcgatggttttccaacttatcgaactacattatctc |
418 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
5309054 |
caggccttgtgggactgtctctttcttatgcttttaccttgacaggagcccaaatattttggactcgatggttttccaacttatcaaactatattatctc |
5309153 |
T |
|
| Q |
419 |
tgttgaaagaatcaatcagttcattcacattccatttgagcctcctgccattgtggagaataatcgacccccttcttcatggccttccaagggtaggatt |
518 |
Q |
| |
|
||| ||||||||||| || ||||||||||| ||| | ||||||| |||||||||| ||||||||||| || |||||||||||||| ||||| | ||| |
|
|
| T |
5309154 |
tgtcgaaagaatcaaccaattcattcacataccagctaagcctccctccattgtggataataatcgacctccatcttcatggccttctaagggaaaaatt |
5309253 |
T |
|
| Q |
519 |
gatgttcaaggattagaggtaacattgcat |
548 |
Q |
| |
|
||| || |||| |||||||||| ||||||| |
|
|
| T |
5309254 |
gatcttgaaggcttagaggtaaaattgcat |
5309283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 319 - 540
Target Start/End: Complemental strand, 5288178 - 5287957
Alignment:
| Q |
319 |
caggacttgtgggactgtctctttattatgctttaattttgacatcagcccaaatattttggactcgatggttttccaacttatcgaactacattatctc |
418 |
Q |
| |
|
|||| |||||||| |||||||||| ||||||||| | ||||||| ||||||||||||||||| | ||||||||||||||||||| ||| | |||||||| |
|
|
| T |
5288178 |
caggccttgtggggctgtctctttcttatgcttttactttgacaggagcccaaatattttggagtagatggttttccaacttatcaaaccatattatctc |
5288079 |
T |
|
| Q |
419 |
tgttgaaagaatcaatcagttcattcacattccatttgagcctcctgccattgtggagaataatcgacccccttcttcatggccttccaagggtaggatt |
518 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||| ||| || |||||||||||||| ||||| ||||| || |||||||||||||||||||| | |||| |
|
|
| T |
5288078 |
cgttgaaagaatcaaccaattcattcacataccagctgaaccgcctgccattgtggataataaccgaccaccatcttcatggccttccaagggcaagatt |
5287979 |
T |
|
| Q |
519 |
gatgttcaaggattagaggtaa |
540 |
Q |
| |
|
||| ||||||| |||||||||| |
|
|
| T |
5287978 |
gatcttcaaggcttagaggtaa |
5287957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 948 - 1122
Target Start/End: Complemental strand, 5279704 - 5279530
Alignment:
| Q |
948 |
agttgaattttacatgagccattcaataaaataatatttgatttctatatttaggctgtnnnnnnntgtcagcttaaggaaacaatcagcaagctaccaa |
1047 |
Q |
| |
|
||||||||||||||||||| |||||||||| | ||||||||| | | | |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5279704 |
agttgaattttacatgagctattcaataaagttatatttgatgtgtgtgtttaggctgtagagaaatgtcagcttaaggaaacaatcagcaagctaccaa |
5279605 |
T |
|
| Q |
1048 |
gtctcttagactcttctggtaagtctttcaacattaaggaaactatataatcattgaagctgcagctgctcattt |
1122 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||||| |
|
|
| T |
5279604 |
gtctcttggactcttctggtaagtctttcaacattaaggaaactatataatcattgaatctacaccttctcattt |
5279530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 295 - 540
Target Start/End: Complemental strand, 14947433 - 14947189
Alignment:
| Q |
295 |
ggcaattctcctgttctttgtctccaggacttgtgggactgtctctttattatgctttaattttgacatcagcccaaatattttggactcgatggttttc |
394 |
Q |
| |
|
||||| ||||||||||| ||| | |||| ||||| ||||||||||||| ||||||||| | |||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
14947433 |
ggcaactctcctgttctgtgt-tgcaggccttgttggactgtctctttcttatgcttttaccttgacaggagcccaaatattttggactagatggttttc |
14947335 |
T |
|
| Q |
395 |
caacttatcgaactacattatctctgttgaaagaatcaatcagttcattcacattccatttgagcctcctgccattgtggagaataatcgacccccttct |
494 |
Q |
| |
|
|| ||||| ||| | ||||||||||||||||||||||| || |||||| |||| ||| ||||||||||||| ||||||| |||| ||||| || ||| |
|
|
| T |
14947334 |
aaatttatcaaaccatattatctctgttgaaagaatcaaacaattcattaacataccagctgagcctcctgccgttgtggatcataaccgacctccatct |
14947235 |
T |
|
| Q |
495 |
tcatggccttccaagggtaggattgatgttcaaggattagaggtaa |
540 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||||| |||||||||| |
|
|
| T |
14947234 |
tcatggccttccaagggcaagattgatcttcaaggcttagaggtaa |
14947189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 365 - 557
Target Start/End: Original strand, 15127672 - 15127864
Alignment:
| Q |
365 |
agcccaaatattttggactcgatggttttccaacttatcgaactacattatctctgttgaaagaatcaatcagttcattcacattccatttgagcctcct |
464 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| || || || |||||||||||||||||||| || ||||||||||| ||| |||||||||| |
|
|
| T |
15127672 |
agcccaaatattttggactagatggttttccaacttatcaaattatatcatctctgttgaaagaatcaagcaattcattcacataccagctgagcctcct |
15127771 |
T |
|
| Q |
465 |
gccattgtggagaataatcgacccccttcttcatggccttccaagggtaggattgatgttcaaggattagaggtaacattgcatttatgtctt |
557 |
Q |
| |
|
||||||||||| ||||| || || || |||||||||||||||||||| | ||||||| ||||||| |||||||||| |||||| || ||||| |
|
|
| T |
15127772 |
gccattgtggataataaccggccgccatcttcatggccttccaagggcaagattgatcttcaagggttagaggtaatgttgcatctaagtctt |
15127864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 319 - 557
Target Start/End: Complemental strand, 5280451 - 5280213
Alignment:
| Q |
319 |
caggacttgtgggactgtctctttattatgctttaattttgacatcagcccaaatattttggactcgatggttttccaacttatcgaactacattatctc |
418 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| |||||| ||||||| |||||||||||||||||||| |||||| || ||||| |||||||| |
|
|
| T |
5280451 |
caggccttgtgggactgtctctttcttatgctttttccttgacaggagcccaagtattttggactcgatggtttaacaacttgtcaaactatattatctc |
5280352 |
T |
|
| Q |
419 |
tgttgaaagaatcaatcagttcattcacattccatttgagcctcctgccattgtggagaataatcgacccccttcttcatggccttccaagggtaggatt |
518 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||| ||||||||| ||||||||||| ||||| ||||| || | ||| |||||||||||||| | |||| |
|
|
| T |
5280351 |
cgttgaaagaatcaagcaattcattcacataccagctgagcctcccgccattgtggataataaccgacctccatattcgtggccttccaagggcaagatt |
5280252 |
T |
|
| Q |
519 |
gatgttcaaggattagaggtaacattgcatttatgtctt |
557 |
Q |
| |
|
||| | ||||| || ||||||| |||||| ||||||| |
|
|
| T |
5280251 |
gatctccaaggcttggaggtaatgttgcatccatgtctt |
5280213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 1014 - 1122
Target Start/End: Original strand, 5309810 - 5309918
Alignment:
| Q |
1014 |
tgtcagcttaaggaaacaatcagcaagctaccaagtctcttagactcttctggtaagtctttcaacattaaggaaactatataatcattgaagctgcagc |
1113 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
5309810 |
tgtcagcttaaggaaacaatcagcaagctatcaagtctcttggactcttctggtaagtctttcaacattaaggaaactatataatcattgaagctacaac |
5309909 |
T |
|
| Q |
1114 |
tgctcattt |
1122 |
Q |
| |
|
| ||||||| |
|
|
| T |
5309910 |
ttctcattt |
5309918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 981 - 1075
Target Start/End: Original strand, 15128365 - 15128459
Alignment:
| Q |
981 |
atatttgatttctatatttaggctgtnnnnnnntgtcagcttaaggaaacaatcagcaagctaccaagtctcttagactcttctggtaagtcttt |
1075 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
15128365 |
atatttgatttgtatgtttaggctgtagagaaatgtcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaaatcttt |
15128459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 613 - 926
Target Start/End: Complemental strand, 5348813 - 5348500
Alignment:
| Q |
613 |
tttcaggttagatatcgtcctaacgctccattagtcctcaagggaatcacttgtacatttcaagaagggagtagggtgggagttgttggaaggactggta |
712 |
Q |
| |
|
|||||| ||||||| ||||| || ||||||||||| || || |||||||| ||||| || ||||||| | || || |||||||| ||||| ||||| | |
|
|
| T |
5348813 |
tttcagattagataccgtccaaatgctccattagtactaaatggaatcacatgtactttcaaagaaggaaccagagtaggagttgtgggaagaactggga |
5348714 |
T |
|
| Q |
713 |
ctggaaaaagtacgcttataagtgctttgtttcgcttagttgagccttcaaaaggtgctattctcatagatagaataaacatatgctcaatcgggttgca |
812 |
Q |
| |
|
||| |||| || ||| ||||||| |||||||| || || || ||| ||| |||| || || |||||| || | |||||||||||||| || | | |
|
|
| T |
5348713 |
gtgggaaaacaacacttttaagtgcattgtttcgtttggtggaacctacaagtggtgaaatacttatagatggacttaacatatgctcaattggtcttaa |
5348614 |
T |
|
| Q |
813 |
ggatttgagaactaagctaagcatcattcctcaagaaccaactcttttcaagggcagcattaggacaaacctcgaccctctaggcctgtactcagatgat |
912 |
Q |
| |
|
||||| |||| |||||||| ||||| ||||||||||||| |||||||||||| || |||| || ||| | || || |||| || | |||||||||| |
|
|
| T |
5348613 |
agatttaagaatgaagctaagtatcatccctcaagaaccaattcttttcaagggtagtgttagaaccaacttggatccactagaccaattctcagatgat |
5348514 |
T |
|
| Q |
913 |
gaaatatggaaggt |
926 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
5348513 |
gagatatggaaggt |
5348500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 981 - 1067
Target Start/End: Complemental strand, 14946674 - 14946588
Alignment:
| Q |
981 |
atatttgatttctatatttaggctgtnnnnnnntgtcagcttaaggaaacaatcagcaagctaccaagtctcttagactcttctggt |
1067 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
14946674 |
atatttgatttgtatgtttaggctgtagagaaatgtcagcttaaggaaacaatctgcaagctaccaagtctcttggactcttctggt |
14946588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 16 - 930
Target Start/End: Complemental strand, 31524971 - 31524033
Alignment:
| Q |
16 |
gagacatcacttggagtggttactgtaagagcattcaacatggtagatggattttacaaaaactactt-aaaacttgtggacaaagatgcttcattgttc |
114 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| || || ||| ||||||| ||||||||| |||| ||||||| | ||||| |
|
|
| T |
31524971 |
gagacatcacttggagtggttactataagagcattcaacatggtagacagacttatgaaatactactttaaaacttgtcgacacagatgctacgctgttc |
31524872 |
T |
|
| Q |
115 |
tttcattctaatgtgggaatggaatggatggttataaggattgaagcacttcaaaatttaactctcatcaccgcagctttgttgctaattcttgttcctc |
214 |
Q |
| |
|
|||||||||||||| | ||||| |||||||||||||||||||| |||||||||| ||| || | ||||| ||||| |||||||| ||||| |||||| |
|
|
| T |
31524871 |
tttcattctaatgttgccatggagtggatggttataaggattgaggcacttcaaactttgacagttatcactgcagcattgttgcttattctacttcctc |
31524772 |
T |
|
| Q |
215 |
gtggatatgtgtccccaggta---ataatgttgcataaga-gatcatctgcga---tgacatgattttgc---taatactgac----aattctcggcaat |
300 |
Q |
| |
|
|||||||||||| ||||||| ||| | |||||||| | | || ||||| ||||||||||||| |||||||||| || ||| || ||| |
|
|
| T |
31524771 |
atggatatgtgtctccaggtacttatagtattgcataaaaaggtcgattgcgacgatgacatgattttgacgataatactgactgctaactcttggaaat |
31524672 |
T |
|
| Q |
301 |
tctcctgttctttgtctccaggacttgtgggactgtctctttattatgctttaattttgacatcagcccaaatattttggactcgatggttttccaactt |
400 |
Q |
| |
|
||| ||||| | ||| | |||||||||||||||||||||||| |||||||| | ||||||| |||||| |||||||||||| |||||||||||| ||| |
|
|
| T |
31524671 |
tcttctgttgtgtgtgtgcaggacttgtgggactgtctctttcgtatgcttttaatttgacaggagcccagatattttggactagatggttttccacctt |
31524572 |
T |
|
| Q |
401 |
atcgaactacattatctctgttgaaagaatcaatcagttcattcacattccatttgagcctcctgccattgtggagaataatcgacccccttcttcatgg |
500 |
Q |
| |
|
||| ||| |||| ||||| |||||||||||||| |||||||| |||||||| || |||||||||||| ||||| |||| ||||| || ||| ||||| |
|
|
| T |
31524571 |
atcaaacaacataatctcggttgaaagaatcaagcagttcatcgacattccagccgaacctcctgccattatggaggataaccgaccgccatctccatgg |
31524472 |
T |
|
| Q |
501 |
ccttccaagggtaggattgatgttcaaggattagaggtaacat-----tgcatttatgtctttattttgcactccactttcaagaaagt----tctataa |
591 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||| ||||| |||||||| ||| |||||||||||||| | | ||||||| |
|
|
| T |
31524471 |
ccttccaagggtaggattgaagttcaaggcttagaggtaacataacattgcatccatgtcttttcttttcactccactttcaatattttcctatctataa |
31524372 |
T |
|
| Q |
592 |
tttctgttttatgtacattggtttcaggttagatatcgtcctaacgctccattagtcctcaagggaatcacttgtacatttcaagaagggagtagggtgg |
691 |
Q |
| |
|
||| |||||| |||||||||||||||| ||||||| ||||| || || ||||||||||| ||||||||||||||||||||| | |||||||||||||| | |
|
|
| T |
31524371 |
tttatgttttttgtacattggtttcagattagataccgtccaaatgcaccattagtccttaagggaatcacttgtacatttaatgaagggagtagggtag |
31524272 |
T |
|
| Q |
692 |
gagttgttggaaggactggtactggaaaaagtacgcttataagtgctttgtttcgcttagttgagccttcaaaaggtgctattctcatagatagaataaa |
791 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| | ||||| |||| |||||||| | || || |
|
|
| T |
31524271 |
gagttgttggaaggactggaagtggaaaaagtacacttataagtgctttgtttcgcttagttgagccttcgagaggtgatattatcatagatgggattaa |
31524172 |
T |
|
| Q |
792 |
catatgctcaatcgggttgcaggatttgagaactaagctaagcatcattcctcaagaaccaactcttttcaagggcagcattaggacaaacctcgaccct |
891 |
Q |
| |
|
||||||||| ||||||||| | |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31524171 |
catatgctcgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaagggcagcattaggacaaaccttgaccct |
31524072 |
T |
|
| Q |
892 |
ctaggcctgtactcagatgatgaaatatggaaggtgaat |
930 |
Q |
| |
|
||||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
31524071 |
ttaggcctatacacagataatgaaatatggaaggtgaat |
31524033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1014 - 1075
Target Start/End: Complemental strand, 31523935 - 31523874
Alignment:
| Q |
1014 |
tgtcagcttaaggaaacaatcagcaagctaccaagtctcttagactcttctggtaagtcttt |
1075 |
Q |
| |
|
||||| || |||||||||||||||| ||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
31523935 |
tgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtcttt |
31523874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 60; Significance: 5e-25; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 113952 - 114019
Alignment:
| Q |
74 |
aaaactacttaaaacttgtggacaaagatgcttcattgttctttcattctaatgtgggaatggaatgg |
141 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
113952 |
aaaactacttaaaacttgtggacacagatgcttcattgttctttcattctaatgtggcaatggaatgg |
114019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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