View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19774_high_22 (Length: 318)
Name: NF19774_high_22
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 144 - 302
Target Start/End: Complemental strand, 11010059 - 11009901
Alignment:
| Q |
144 |
aactagtttatagagagagcccactaatgaaataagaccatagtccccaacactgaggtgttatcatgaacatagagggatgtattcgtcgccttcaaat |
243 |
Q |
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| T |
11010059 |
aactagtttatagagagagcccactaataaaataaggcaatagtccccaatactgaggtgttatcatgaacatagagggatgcattcgtcaccttcaaat |
11009960 |
T |
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| Q |
244 |
ccagatccctccatttgtaacttaatcctccaattcaaatccccaaaaacctccttgtt |
302 |
Q |
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| T |
11009959 |
tcagatccctccatttgtaacttaatcctccaattcaagtccccaaaaacctccttgtt |
11009901 |
T |
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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 11010117 - 11010064
Alignment:
| Q |
53 |
catccaccaattgactacctctaataaacgttgattgatttggcgaaatcttat |
106 |
Q |
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| T |
11010117 |
catccaccaattgactacctctaataattgttgattgatttggcgaaatcttat |
11010064 |
T |
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