View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19774_high_24 (Length: 300)

Name: NF19774_high_24
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19774_high_24
NF19774_high_24
[»] chr2 (1 HSPs)
chr2 (12-300)||(26734430-26734717)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 12 - 300
Target Start/End: Complemental strand, 26734717 - 26734430
Alignment:
Q  12 aacctgtgtatgtagtgaaacatgaaagcacctgaatgtcatgcatgatggtttatttcccaaattgaaccaaaaaacgatacaactgcaaacaaaagag 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  26734717 aacctgtgtatgtagtgaaacatgaaagcacctgaatgtcatgcatgatggtttatttcccaaattgaaccaaaaaacgatacaactgcaaacaaaa-ag 26734619  T
Q  112 aatccgaacatgctctaacaaagagagaaaatatttgtcccataaccataacttagttgacagggacattgtattttatatgtaggacgtgttcaaatct 211  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||  ||||||||||||| ||||||||||||||||||||     
T  26734618 aatccgaacatgctctaacaaagagagaaaatatttgtcccatgaccataacttagttggtagaaacattgtattttacatgtaggacgtgttcaaatcc 26734519  T
Q  212 aaattctccacttattcannnnnnnnnncaacgacaaattttatttattagcatcgacacaagacgtgacaagaactatataatacaac 300  Q
    | ||||||| ||||||||          ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26734518 agattctcctcttattcattttttttttcaacgacaaattttatttattagcatcgacagaagacgtgacaagaactatataatacaac 26734430  T

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