View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19774_high_39 (Length: 237)
Name: NF19774_high_39
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 49001928 - 49001843
Alignment:
| Q |
1 |
tttagtttaagttcgactcatttaaagtttacgaaaaactcggtttgattcgttaggttaaatttgtctgctcaaatcacataatt |
86 |
Q |
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| T |
49001928 |
tttagtttaagttcgactcatttaaagtttacgaaaaactcggtttgattcgttaggttaaatttgtctgctcgaatcacataatt |
49001843 |
T |
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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 49001768 - 49001692
Alignment:
| Q |
161 |
ggattgaatttaaataacagctgtcataaacatacattacttcaaggattggcacaaatacagagttataacatgca |
237 |
Q |
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| T |
49001768 |
ggattgaatttaaataacagctgtcataaacatacattactttaaggattggcacaaatacagagttataacatgca |
49001692 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 7029244 - 7029326
Alignment:
| Q |
4 |
agtttaagttcgactcatttaaagtttacgaaaaactcggtttgattcgttaggttaaatttgtctgctcaaatcacataatt |
86 |
Q |
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| T |
7029244 |
agtttaagttcggctcgtttaaagtttacgaacaatttggttaggttctttaggtttagtttgtttgctcaaatcacataatt |
7029326 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 22563374 - 22563448
Alignment:
| Q |
10 |
agttcgactcatttaaagtttacgaaaaactcggtttgattcgttaggttaaatttgtctgctcaaatcacataa |
84 |
Q |
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| T |
22563374 |
agttcgactcgtttaaggttcacgaacagttcggttcggttcgttaggttcaatttgtttgctcaaatcacataa |
22563448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 17865696 - 17865648
Alignment:
| Q |
38 |
actcggtttgattcgttaggttaaatttgtctgctcaaatcacataatt |
86 |
Q |
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| T |
17865696 |
actcggttcgactcgttaggttcaatttgtttgctcgaatcacataatt |
17865648 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 27195539 - 27195606
Alignment:
| Q |
10 |
agttcgactcatttaaagtttacgaaaaactcggtttgattcgttaggttaaatttgtctgctcaaat |
77 |
Q |
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| T |
27195539 |
agttcggctcgtttaaagttcacgaacagctcggtttgattcgttaggttcaacttgcctactcaaat |
27195606 |
T |
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