View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19774_high_8 (Length: 468)

Name: NF19774_high_8
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19774_high_8
NF19774_high_8
[»] chr4 (1 HSPs)
chr4 (1-468)||(31098421-31098889)


Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 31098421 - 31098889
Alignment:
Q  1 tttgcaatgctgcggcggcaaagacggtcttctcccaacaccatctcatggtcgtgacttcttcaataataagccatctcaaacaaacgcatctttctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31098421 tttgcaatgctgcggcggcaaagacggtcttctcccaacaccatctcatggtcgtgacttcttcaataataagccatctcaaacaaacgcatctttctct 31098520  T
Q  101 tctcgcagtacatagctctcattttcttaaaactcgtggctttaccttgttgcaacagacctccatcaagatgcaaaaaatactccctccttggtcacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  31098521 tctcgcagtacatagctctcattttcttaaaactcgtggctttacctcgttgcaacagacctccatcaagatgcaaatattactccctccttggtcacaa 31098620  T
Q  201 tctcccactgccttcgcaaccacctgctcatcctctctttggcatgctcatttcagtcatttctcctaaaaaattctcactcgaatgttgtctctcaaca 300  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31098621 tctcccactgcctttgcaaccacctgctcatcctctctttggcatgctcatttcagtcatttctcctaaaaaattctcactcgaatgttgtctctcaaca 31098720  T
Q  301 aattttgataataaaaactctgtaatgtgtcatgttnnnnnnnncatgaacttctattttccgtatgtccataaaaactagttgtcctcttgaactca-t 399  Q
    ||||||||||||||||||||||||||||||||| ||        ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |    
T  31098721 aattttgataataaaaactctgtaatgtgtcatattaaaaaaaacatgaacttctgttttctgtatgtccataaaaactagttgtcctcttgaactcatt 31098820  T
Q  400 ttttctgatgtttggagaccctctccaattaacactatcagtggatacaaatattatcttgtgttcgtt 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31098821 ttttctgatgtttggagaccctctccaattaacactatcagtggatacaaatattatcttgtgttcgtt 31098889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University