View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19774_high_9 (Length: 464)

Name: NF19774_high_9
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19774_high_9
NF19774_high_9
[»] chr7 (2 HSPs)
chr7 (246-374)||(41772186-41772313)
chr7 (1-75)||(2430706-2430780)
[»] chr3 (6 HSPs)
chr3 (1-75)||(38888292-38888366)
chr3 (1-75)||(46235386-46235460)
chr3 (2-75)||(43747869-43747942)
chr3 (1-72)||(5175515-5175586)
chr3 (17-72)||(5185806-5185862)
chr3 (11-69)||(5241275-5241334)
[»] chr1 (3 HSPs)
chr1 (3-75)||(8170499-8170571)
chr1 (1-75)||(4796031-4796105)
chr1 (1-72)||(25659089-25659160)
[»] chr8 (3 HSPs)
chr8 (1-75)||(26747846-26747920)
chr8 (1-75)||(27631664-27631738)
chr8 (1-49)||(24100809-24100857)
[»] chr5 (3 HSPs)
chr5 (1-75)||(7529843-7529917)
chr5 (1-73)||(9269620-9269691)
chr5 (23-75)||(35467931-35467983)
[»] chr2 (1 HSPs)
chr2 (1-75)||(5077248-5077322)
[»] chr4 (5 HSPs)
chr4 (1-72)||(49889330-49889401)
chr4 (1-75)||(49233177-49233251)
chr4 (3-75)||(45781779-45781851)
chr4 (1-75)||(53921848-53921920)
chr4 (26-69)||(30658062-30658105)
[»] scaffold0096 (1 HSPs)
scaffold0096 (3-75)||(27881-27954)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-72)||(67705-67777)
[»] scaffold1844 (1 HSPs)
scaffold1844 (2-67)||(37-102)


Alignment Details
Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 246 - 374
Target Start/End: Original strand, 41772186 - 41772313
Alignment:
Q  246 ccctaaatgtttcgctcagagtgtgtgtttattctttgatcatgttccaataggtggtatagagtgtctcaagctatggggtcctaaacttcaagattta 345  Q
    |||||| |||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41772186 ccctaagtgtttcgctctgagtgtgtgtttattctttgatcaagttctaataggtggtatagagtgtctcaagctatgggg-cctaaacttcaagattta 41772284  T
Q  346 agtgttgttttctttgttcttgtgcgttg 374  Q
    |||||||||||||||||||||||||||||    
T  41772285 agtgttgttttctttgttcttgtgcgttg 41772313  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 2430780 - 2430706
Alignment:
Q  1 ggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 75  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||    
T  2430780 ggaagaagacaaaaatgtctaatatgccattgattttttaattaatcataaattataatgttgtcttattaagga 2430706  T

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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 38888292 - 38888366
Alignment:
Q  1 ggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 75  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38888292 ggaagaagacaaaaaagtctattatgccattggttttttaattaatcataaattataatgttgtcttatcaagga 38888366  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 46235386 - 46235460
Alignment:
Q  1 ggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 75  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  46235386 ggaagaagacaaaaaagtctattatgccattggttttttaattaatcataaattataatgatgtcttatcaagga 46235460  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 43747942 - 43747869
Alignment:
Q  2 gaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 75  Q
    |||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  43747942 gaagaagacaaaaaagtctattatgccattggttttttaattattcataaattataatgttgtcttatcaagga 43747869  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5175515 - 5175586
Alignment:
Q  1 ggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaa 72  Q
    ||||||||| ||||| |||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||    
T  5175515 ggaagaagataaaaaagtctaatatgtcattggtttttcaattaatcataaattataatgttgtcttatcaa 5175586  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 5185806 - 5185862
Alignment:
Q  17 gtctaatatgccattggtttttt-aattaatcataaattataattttgtcttatcaa 72  Q
    ||||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||||    
T  5185806 gtctaatataccattggttttttcaattaatcataaattataatattggcttatcaa 5185862  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 5241275 - 5241334
Alignment:
Q  11 aaaaatgtctaatatgccattggttttt-taattaatcataaattataattttgtcttat 69  Q
    ||||||||||||||| |||||| |||||  |||||||||| ||||||||| |||||||||    
T  5241275 aaaaatgtctaatataccattgatttttgcaattaatcatcaattataatattgtcttat 5241334  T

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Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 8170571 - 8170499
Alignment:
Q  3 aagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 75  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||    
T  8170571 aagaagacaaaaatgtctaatatgccattgatttttcaattaatcataaattataatgttgtcttatcaagga 8170499  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 4796105 - 4796031
Alignment:
Q  1 ggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 75  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||||    
T  4796105 ggaagaagacaaaaatgtctaatatgccattgatttttcaattaatcataaattataatgttgttttatcaagga 4796031  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 25659160 - 25659089
Alignment:
Q  1 ggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaa 72  Q
    ||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  25659160 ggaagaagacaaaaaagtctattatgtcattggttttttaattaatcataaattataatgttgtcttatcaa 25659089  T

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Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 26747846 - 26747920
Alignment:
Q  1 ggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 75  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  26747846 ggaagaagacaaaaaagtctattatgccattggttttttaattaatcataaattagaatgttgtcttatcaagga 26747920  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 27631738 - 27631664
Alignment:
Q  1 ggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 75  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||| | |||| || |||||| |||||    
T  27631738 ggaagaagacaaaaaagtctattatgccattggttttttaattaatcataaagtgtaatgttatcttattaagga 27631664  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24100857 - 24100809
Alignment:
Q  1 ggaagaagacaaaaatgtctaatatgccattggttttttaattaatcat 49  Q
    |||||| || |||||||||||||||||||||| ||||||||||||||||    
T  24100857 ggaagaggataaaaatgtctaatatgccattgattttttaattaatcat 24100809  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 7529917 - 7529843
Alignment:
Q  1 ggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 75  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||  ||||| |||||||||||||||    
T  7529917 ggaagaagacaaaaaagtctaatatgccattgattttttaattaatcataaaaaataatgttgtcttatcaagga 7529843  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 9269691 - 9269620
Alignment:
Q  1 ggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaag 73  Q
    ||||||||||||||| || | |||||  |||||||||| |||||||||||||||||||| |||||||||||||    
T  9269691 ggaagaagacaaaaaagtatgatatgttattggttttt-aattaatcataaattataatgttgtcttatcaag 9269620  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 35467931 - 35467983
Alignment:
Q  23 tatgccattggttttttaattaatcataaattataattttgtcttatcaagga 75  Q
    |||||||||| |||||||||||||||||||||||||| |||| ||||||||||    
T  35467931 tatgccattgattttttaattaatcataaattataatgttgttttatcaagga 35467983  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 5077322 - 5077248
Alignment:
Q  1 ggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 75  Q
    ||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||    
T  5077322 ggaagaagacaaaaaagtctaatatgtcattgattttttaattaatcataaattatgatgttgtcttatcaagga 5077248  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 49889401 - 49889330
Alignment:
Q  1 ggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaa 72  Q
    |||||||||||||||| ||||||||| ||||  |||||||||||||||||||||||||| ||||||||||||    
T  49889401 ggaagaagacaaaaatatctaatatgtcattaattttttaattaatcataaattataatgttgtcttatcaa 49889330  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 49233177 - 49233251
Alignment:
Q  1 ggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 75  Q
    ||||||||||||||| || || |||||| |||||||||||||| ||||||||||||||| |||||||||||||||    
T  49233177 ggaagaagacaaaaaagtttattatgccgttggttttttaattgatcataaattataatgttgtcttatcaagga 49233251  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 45781779 - 45781851
Alignment:
Q  3 aagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 75  Q
    ||||||||||||| || || |||| ||||||||||||||||||||||||||| |||| || ||||||||||||    
T  45781779 aagaagacaaaaaagtttattatgtcattggttttttaattaatcataaattgtaatgttatcttatcaagga 45781851  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 53921848 - 53921920
Alignment:
Q  1 ggaagaagacaaaaat-gtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 75  Q
    |||||||||||||||  |||||||||| ||||||||||||||   ||||||||||||||| |||||||||||||||    
T  53921848 ggaagaagacaaaaaaagtctaatatgtcattggttttttaa---atcataaattataatgttgtcttatcaagga 53921920  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 30658062 - 30658105
Alignment:
Q  26 gccattggttttttaattaatcataaattataattttgtcttat 69  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  30658062 gccattggttttttaattaatcataaattataatgttgtcttat 30658105  T

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Target: scaffold0096 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 27881 - 27954
Alignment:
Q  3 aagaagacaaaaat-gtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 75  Q
    |||||||||||||  ||||| ||||||||||||| |||||||||| |||||||||||| |||||||||||||||    
T  27881 aagaagacaaaaaaagtctattatgccattggttatttaattaattataaattataatgttgtcttatcaagga 27954  T

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Target: scaffold0060 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 67705 - 67777
Alignment:
Q  1 ggaagaagacaaaaatgtctaatatgccattggtttt-ttaattaatcataaattataattttgtcttatcaa 72  Q
    ||||||||||||||| ||||| |||||| |||||||| |||||||||||||||||||| | ||||||||||||    
T  67705 ggaagaagacaaaaaagtctattatgccgttggtttttttaattaatcataaattatattgttgtcttatcaa 67777  T

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Target: scaffold1844 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1844
Description:

Target: scaffold1844; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 37 - 102
Alignment:
Q  2 gaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtctt 67  Q
    |||||||||| ||| |||| |||| ||||| ||||||||   |||||||||||||||| |||||||    
T  37 gaagaagacataaaagtctgatataccattagttttttatcgaatcataaattataatgttgtctt 102  T

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