View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19774_low_11 (Length: 443)

Name: NF19774_low_11
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19774_low_11
NF19774_low_11
[»] chr4 (1 HSPs)
chr4 (1-443)||(42553073-42553526)


Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 42553073 - 42553526
Alignment:
Q  1 aatttatcctgtcatgtatacatatcaannnnnnngtttcattcagcatat--atataacttaatattgttaggtgatgggtcgaatgcactctgcttga 98  Q
    |||||||||||||||||||| |||||||       ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  42553073 aatttatcctgtcatgtataaatatcaatttttt-gtttcattcagcatatatatataacttaatattgttaggtgatgggtcgaatgcactctgcttga 42553171  T
Q  99 atttaatcaaaagccatgttccctgtgaggatagtctgaagtctgaacaacttaaaaatatgatcattgttgagaattactactgtttttcacaatcgta 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42553172 atttaatcaaaagccatgttccctgtgaggatagtctgaagtctgaacagcttaaaaatatgatcattgttgagaattactactgtttttcacaatcgta 42553271  T
Q  199 tgtgataagaattacaaactacatgtactaattaaaataaaaaagaatttgaaagtagaagaa--------------atagattagatggtaaagttcca 284  Q
    ||||||||||||||||||||||||||||    |||||||||||||||||| |||||| || ||              |||||||||||||||||||||||    
T  42553272 tgtgataagaattacaaactacatgtac----taaaataaaaaagaatttcaaagtacaaaaagcaaaatgcatctcatagattagatggtaaagttcca 42553367  T
Q  285 caaggagacctcagcatcaacctgatcaatatcaacattattccactgatccctgccatgtcttataaatggagtaataggagatcgtaatggctcatca 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42553368 caaggagacctcagcatcaacctgatcaatatcaacattattccactgatccctgccatgtcttataaatggagtaataggagatcgtaatggctcatca 42553467  T
Q  385 gccatactcctaaaccaatcatgcaacatttcctcctctggaacttccacacacagtcc 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42553468 gccatactcctaaaccaatcatgcaacatttcctcctctggaacttccacacacagtcc 42553526  T

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