View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19774_low_12 (Length: 440)
Name: NF19774_low_12
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 24147674 - 24147261
Alignment:
| Q |
1 |
aagttagagtcgctcatagttctaaactagtaaacatagttgtgttcatctaaacattacaataaacgtttcattcctaaccttttaactcttatgaact |
100 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24147674 |
aagttatagtcactcatagttctaaactagtaaacatagttgtgttcatctaaacatttcaacaaacgtttcattcctaaccttttaactcttatgaact |
24147575 |
T |
|
| Q |
101 |
ttttgaatctttgatgtgcgttgtaaacttgattgattaacgttacattgtcttttatttaatttttcaaagtcatcaagatattccttagttgcatcat |
200 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24147574 |
ttttgaatct--------cgttgtaaatttgattgattaacgttacattgtcttttctttaatttttcaaagtcatcaagatattccttagttgcatcat |
24147483 |
T |
|
| Q |
201 |
attctttctaattcagcaacagactcattttcttcctcatttaaactaccaacaataatatgacctaactttgatttcgtgagatggttatgcactctac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24147482 |
attctttctaattcagcaacagactcattttcttcctcatttaaactaccaacaataatatgacctaactttgatttcatgagatggttatgcactctac |
24147383 |
T |
|
| Q |
301 |
aaacaatactaagtgaccattcatttgattttaataaataaccaggcaacttaaatgagcattcactttgtcttgatcatgtgtctttttgcttcaattt |
400 |
Q |
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| T |
24147382 |
agacaatactaagtgaccattcatttgattttaataaataaccaggcaacttaaatgagcattcactttttctcgaccatgtgtctttttgcttcaattt |
24147283 |
T |
|
| Q |
401 |
cttcttggttccttgctacacg |
422 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
24147282 |
cttcttggttccttgctacacg |
24147261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 366
Target Start/End: Complemental strand, 55974368 - 55974267
Alignment:
| Q |
265 |
ctaactttgatttcgtgagatggttatgcactctacaaacaatactaagtgaccattcatttgattttaataaataaccaggcaacttaaatgagcattc |
364 |
Q |
| |
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|||||||||| ||| | | |||||| ||||||| | ||||||||| | || |||||||||||||| || ||||||||| ||| ||||||||||||| |
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| T |
55974368 |
ctaactttgacttcatcaaatggttgtgcactccattaacaatactcaccgatcattcatttgatttcaacaaataaccacataacctaaatgagcattc |
55974269 |
T |
|
| Q |
365 |
ac |
366 |
Q |
| |
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|| |
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| T |
55974268 |
ac |
55974267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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