View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19774_low_13 (Length: 416)
Name: NF19774_low_13
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 402
Target Start/End: Complemental strand, 35352086 - 35351701
Alignment:
| Q |
17 |
tctccaacaatgaataagtggacattaattacttttaacattttcaaaacctaaactctacgaaaattcatctccttctacacaatgtgagcttctcaga |
116 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35352086 |
tctccaacaatgaataggtggacattaattacttttaacattttcaaaacctaaactctacgaaaattcatctccttctacacaatgtgagcttctcaga |
35351987 |
T |
|
| Q |
117 |
atcaaaataataattccaggaacatattaattatttttcccatgagcaatagcgcttttggaagtgcttcaacaagacattaaacaaaagnnnnnnntga |
216 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35351986 |
atcaaaataataattccaggaacatagtaattatttttcccatgagcaatagcgcttttggaagtgcttcaacaagacattaaacaaaagaaaaaaatga |
35351887 |
T |
|
| Q |
217 |
aacagtaatacgaaaactttgttgacataggtatttcttaccatattgaatataatagtcaagcattacctgcacatcattttgatttgtattttcatca |
316 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35351886 |
aacagtaatacaaaaactttgttgacataggtatttcttaccatattgaatataatagtcaagcattacctgcacatcattttgatttgtattttcatca |
35351787 |
T |
|
| Q |
317 |
ccaaacttgtttagctgtcctgcatctacaggtggagggttactttgctcagaggtatcctccaaagattgtgtttctccattttt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35351786 |
ccaaacttgtttagctgtcctgcatctacaggtggagggttactttgctcagaggtatcctccaaagattgtgtttctccattttt |
35351701 |
T |
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