View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19774_low_15 (Length: 408)

Name: NF19774_low_15
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19774_low_15
NF19774_low_15
[»] chr8 (3 HSPs)
chr8 (130-400)||(2558807-2559077)
chr8 (20-134)||(2559130-2559244)
chr8 (20-81)||(2551548-2551609)
[»] chr4 (5 HSPs)
chr4 (178-270)||(25642261-25642353)
chr4 (178-247)||(18997671-18997740)
chr4 (185-283)||(10169172-10169270)
chr4 (185-238)||(29277840-29277893)
chr4 (257-293)||(5334873-5334909)
[»] chr2 (1 HSPs)
chr2 (181-247)||(35246872-35246938)
[»] chr1 (1 HSPs)
chr1 (239-292)||(34049411-34049464)
[»] chr7 (1 HSPs)
chr7 (316-398)||(21602398-21602479)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 130 - 400
Target Start/End: Complemental strand, 2559077 - 2558807
Alignment:
Q  130 ctgtcgtaggtgtagtgtaagtgatgaaacaaagatcagagagaacgtattaagctttgttaactatttgtctaatgaccttccttaatcgattatatat 229  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2559077 ctgtagtaggtgtagtgtaagtgatgaaacaaagatcagagagaacgtattaagctttgttaactatttgtctaatgaccttccttaatcgattatatat 2558978  T
Q  230 ttcttctatttcaattattacttcacttatccctcatcatatgtttccatgtctagaaaacgacatgaaattcattttacctgtcgacttccgttgctga 329  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||    
T  2558977 tccttctatttcaattattacttcacttatccctcatcatatgtttccatgtctggaaaacgacatgaaattcattttacctgtcgacttccgatgttga 2558878  T
Q  330 gcaaaatagacaattgattcaatgacatataaccgaatagttgaatataaatgcaaaccagaccctatgct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2558877 gcaaaatagacaattgattcaatgacatataaccgaatagttgaatataaatgcaaaccagaccctatgct 2558807  T

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Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 2559244 - 2559130
Alignment:
Q  20 acttggactagtaatacgaaggatttttcggtccttcgtataatagtaagtatgccggttttataaaaaataaaacatcaaatctaacgagacacgtgca 119  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  2559244 acttggactagtaatacgaaggatttttcagtccttcgtataatagtaagtatgccggttttatcaaaaataaaacatcaaatctaacgagacacatgca 2559145  T
Q  120 ataccataacctgtc 134  Q
    |||||||||||||||    
T  2559144 ataccataacctgtc 2559130  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 2551609 - 2551548
Alignment:
Q  20 acttggactagtaatacgaaggatttttcggtccttcgtataatagtaagtatgccggtttt 81  Q
    |||||||||||| ||| |||| |||||| |||||||  ||||| |||||||||||| |||||    
T  2551609 acttggactagtgataagaagaatttttaggtcctttatataacagtaagtatgccagtttt 2551548  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 270
Target Start/End: Complemental strand, 25642353 - 25642261
Alignment:
Q  178 attaagctttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattattacttcacttatccctcatcata 270  Q
    ||||||| |||| |||||||||||||||  | ||||||||||||||||||  | ||| ||||||||||||||||  || ||||||||| ||||    
T  25642353 attaagccttgtgaactatttgtctaatatcattccttaatcgattatatcctccttttatttcaattattactcaacatatccctcaacata 25642261  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 18997740 - 18997671
Alignment:
Q  178 attaagctttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattat 247  Q
    |||||||||  | |||||||||||||||  ||||||| ||||||||||||| | ||| ||||||||||||    
T  18997740 attaagcttcatgaactatttgtctaatatccttcctgaatcgattatatactccttttatttcaattat 18997671  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 283
Target Start/End: Complemental strand, 10169270 - 10169172
Alignment:
Q  185 tttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattattacttcacttatccctcatcatatgtttccatgtct 283  Q
    |||| |||||| | ||||||||||||||||  ||| |||||||| | || |||||||||||||| |||||  | ||||| ||  ||||||| |||||||    
T  10169270 tttgataactaatcgtctaatgaccttcctagatcaattatatactcctcctatttcaattattccttcaactgtcccttattgtatgttttcatgtct 10169172  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 29277840 - 29277893
Alignment:
Q  185 tttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctat 238  Q
    ||||||||||| || ||||||| |||||||||||||| |||||| ||| |||||    
T  29277840 tttgttaactaattatctaatgcccttccttaatcgagtatatacttcatctat 29277893  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 5334873 - 5334909
Alignment:
Q  257 tatccctcatcatatgtttccatgtctagaaaacgac 293  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  5334873 tatccctcattatacgtttccatgtctagaaaacgac 5334909  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 35246938 - 35246872
Alignment:
Q  181 aagctttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattat 247  Q
    |||||| |||||||| || | ||||  |||||||||||||||||||||||||| |||||||| ||||    
T  35246938 aagcttcgttaactaattatttaatttccttccttaatcgattatatatttctcctatttcagttat 35246872  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 34049464 - 34049411
Alignment:
Q  239 ttcaattattacttcacttatccctcatcatatgtttccatgtctagaaaacga 292  Q
    ||||| ||| || |||||||||||||||| ||||||||||||||||| ||||||    
T  34049464 ttcaaatataacctcacttatccctcatcgtatgtttccatgtctagtaaacga 34049411  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 398
Target Start/End: Original strand, 21602398 - 21602479
Alignment:
Q  316 acttccgttgctgagcaaaatagacaattgattcaatgacatataaccgaatagttgaatataaatgcaaaccagaccctatg 398  Q
    ||||||||||||||||||||||||  |||||||| ||| ||||| |||| ||| || ||||| | ||||||||  ||||||||    
T  21602398 acttccgttgctgagcaaaatagattattgattccatggcatatgaccggataatt-aatatgattgcaaacctaaccctatg 21602479  T

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