View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19774_low_16 (Length: 378)
Name: NF19774_low_16
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_low_16 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 361
Target Start/End: Complemental strand, 33664344 - 33664005
Alignment:
| Q |
20 |
ctttatataccacctaactccaactctcctatcacaaacacaaaccatatcacaatcatattacacacgttcacacattctcattctctctctcaacaaa |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33664344 |
ctttatataccacctaactccaactctcctatcacaaacacaaaccatatcacaatccaattacacacgttcacacattctcattctctctctcaacaaa |
33664245 |
T |
|
| Q |
120 |
acnnnnnnncactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgta |
219 |
Q |
| |
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|| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33664244 |
acaaaaa--cactcacaaacttatcaaaccgttacaacaatggaaattgaaacaaaccaaacaatggtagttacaaagaaagtatggaacacactacgta |
33664147 |
T |
|
| Q |
220 |
taattttgttcatgttaacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgccatcaaagccat |
319 |
Q |
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||||||| |||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
33664146 |
taattttcttcatgtttacaaaaaacattgccaaaagcaaaatggtagcagaattaaatctcttgttaaaacgtagcaaactcgccgccatcaaagccat |
33664047 |
T |
|
| Q |
320 |
agccaacagtctaactctccgccaccactcgtccgcctcctt |
361 |
Q |
| |
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|||||||| |||| ||||||||||||||||| | |||||||| |
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| T |
33664046 |
agccaacactctagctctccgccaccactcgactgcctcctt |
33664005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 361
Target Start/End: Complemental strand, 33686146 - 33685795
Alignment:
| Q |
20 |
ctttatataccacctaactccaactctcctatcacaaacacaaaccatatcacaatcatattacacacgttcacacattctcattctctctctcaa---- |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||||||| |||||||| |
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| T |
33686146 |
ctttatataccacctaactccaactctcctatcacaaacacaaaccatatcacaatccaatcacatacgttcacctattctcattctttctctcaagtct |
33686047 |
T |
|
| Q |
116 |
---caaaacnnnnnnn---cactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaac |
209 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33686046 |
ctacaaaacaaaaaaaaaacactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaac |
33685947 |
T |
|
| Q |
210 |
acactacgtataattttgttcatgttaacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgcca |
309 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
33685946 |
acactacgtataattttgttcatgtttacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgttaaaacgtagcaaactcgccgcca |
33685847 |
T |
|
| Q |
310 |
tcaaagccatagccaacagtctaactctccgccaccactcgtccgcctcctt |
361 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||| | |||||||| |
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| T |
33685846 |
tcaaagccatagccaacactctagctctccgccaccactcgactgcctcctt |
33685795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 361
Target Start/End: Complemental strand, 33674956 - 33674605
Alignment:
| Q |
20 |
ctttatataccacctaactccaactctcctatcacaaacacaaaccatatcacaatcatattacacacgttcacacattctcattctctctctcaa---- |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||||||| |||||||| |
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| T |
33674956 |
ctttatataccacctaactccaactctcctatcacaaacacaaaccatatcacaatccaatcacatacgttcacctattctcattctttctctcaagtct |
33674857 |
T |
|
| Q |
116 |
---caaaacnnnnnnn---cactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaac |
209 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33674856 |
ctacaaaacaaaaaaaaaacactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaac |
33674757 |
T |
|
| Q |
210 |
acactacgtataattttgttcatgttaacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgcca |
309 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
33674756 |
acactacgtataattttgttcatgtttacaaaaaacatagccaaaagcaaaatggtagcacaatttaatctcttgctaaaacgtagcaaactcgccgcca |
33674657 |
T |
|
| Q |
310 |
tcaaagccatagccaacagtctaactctccgccaccactcgtccgcctcctt |
361 |
Q |
| |
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||||||| |||||||||| ||| |||||||||||||||||||| ||||||| |
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| T |
33674656 |
tcaaagctatagccaacactctcactctccgccaccactcgtcttcctcctt |
33674605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 158 - 363
Target Start/End: Complemental strand, 33693225 - 33693020
Alignment:
| Q |
158 |
aatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgttcatgttaacaaaaaacatagccaaaagc |
257 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
33693225 |
aatggatattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgttcatgtttacaaaaaacattgccaaaagc |
33693126 |
T |
|
| Q |
258 |
aaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgccatcaaagccatagccaacagtctaactctccgccaccactcgtccgcct |
357 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
33693125 |
aaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgctatcaaagccatagccaacactctcactctccgccaccactcgtccgcct |
33693026 |
T |
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| Q |
358 |
cctttg |
363 |
Q |
| |
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|||||| |
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| T |
33693025 |
cctttg |
33693020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 20 - 361
Target Start/End: Original strand, 103087 - 103425
Alignment:
| Q |
20 |
ctttatataccacctaactccaactctcctatcacaaacacaaaccatatcacaatcatattacacacgttcacacattctcattctctctctcaacaaa |
119 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||| ||| || ||||| |||| ||||||||||| |
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| T |
103087 |
ctttatataccacctaaccccaactctcctatcacaaacacaaaccatatcacaatccaatcacacacattctca--ttctc--tctccctctcaacaaa |
103182 |
T |
|
| Q |
120 |
acnnnnnnn-cactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgt |
218 |
Q |
| |
|
|| ||| | |||||||||||||||||||||||||||||||||||||||| |||| ||||| |||| ||||||||||||||||||||||||||| |
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|
| T |
103183 |
acaaaaaaaacacacgcaaactcatcaaaccgttacaacaatggaaattgaaacaacccaaccaatgatagtaacaaagaaagtatggaacacactacgt |
103282 |
T |
|
| Q |
219 |
ataattttgttcatgttaacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgccatcaaagcca |
318 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||| |||||||||| |
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| T |
103283 |
ctaattttgttaatgttaaaaaaaaacatagccaaaagcaaaaaggtagcacaattaaatctcttgctaaaacgtagcaagctcgccgctatcaaagcca |
103382 |
T |
|
| Q |
319 |
tagccaacagtctaactctccgccaccactcgtccgcctcctt |
361 |
Q |
| |
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|||||||| ||| || |||||||||||| || ||||||||| |
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| T |
103383 |
tagccaaccctctcaccctccgccaccacctgttcgcctcctt |
103425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 136 - 361
Target Start/End: Original strand, 86524 - 86756
Alignment:
| Q |
136 |
aaactcatcaaaccgttacaacaa-------tggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgt |
228 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
86524 |
aaactcatcaaaccgttacaacaaacaagaatggaaattgaaacaaaccaactaattatagtaacaaagaaagtatggaacacactgcgtataattttgt |
86623 |
T |
|
| Q |
229 |
tcatgttaacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgccatcaaagccatagccaacag |
328 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
86624 |
tcatgttaacaaaaaacatagctaaaagcaaaatggtagcagaattaaatctcttgctaaaacgtagcaaactcgccgccatcaaagccatagccaacac |
86723 |
T |
|
| Q |
329 |
tctaactctccgccaccactcgtccgcctcctt |
361 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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|
| T |
86724 |
tctagctctccgccaccactcgtccgcctcctt |
86756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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