View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19774_low_17 (Length: 343)
Name: NF19774_low_17
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_low_17 |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (6 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 6723168 - 6723510
Alignment:
| Q |
1 |
tggttgttaaaaatagaccagtcttgcctaaagaaaatgtgttgtttatgattaattcttttcatgtatgcaaaaggactcagctagcgagatgtgtaat |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| |
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| T |
6723168 |
tggttgttaaaaatagaccaggcttgcctaaagaaaatgtattgtttatgattaattcctttcatgtatgcaaaagttctcagctagcgagatgtataat |
6723267 |
T |
|
| Q |
101 |
ctgcttaagttttgatatggagattatttatatttcaattatggagttaaacatagttagattaatggtcttgaaagtcattaagcaaaattttatccaa |
200 |
Q |
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|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6723268 |
ctgcttaagttttgatatggagattatttgtatttcacttatggagttaaacatagttagattaatggtcttgaaagtcattaagcaaaattttatccaa |
6723367 |
T |
|
| Q |
201 |
nnnnnnnctcaacatttaatggagtgtaatatctgttggagattgatatttttgctgtttttgttcattattatctactgttgttttctgtcataattaa |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6723368 |
tctttttctcaacatttaatggagtgtaatatctgttggagattgatatttttgctatttttgttcattattatctactgttgttttctgtcataattaa |
6723467 |
T |
|
| Q |
301 |
agtgttgtttgtttaagtgtaagtgtcataattagattgttgc |
343 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6723468 |
agtgttgcttgtttaagtgtaagtgtcataattagattgttgc |
6723510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 234 - 343
Target Start/End: Complemental strand, 48025316 - 48025209
Alignment:
| Q |
234 |
tgttggagattgatatttttgctgtttttgttcattattatctactgttgttttctgtcataattaaagtgttgtttgtttaagtgtaagtgtcataatt |
333 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||| |||||| ||||||| |||||||||||||||||||||||||| ||||||| || ||| |||||||||| |
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| T |
48025316 |
tgttggagattgatattttt-ctgtttt-gttaattattttctactgctgttttctgtcataattaaagtgttgcttgtttatgtataaatgtcataatt |
48025219 |
T |
|
| Q |
334 |
agattgttgc |
343 |
Q |
| |
|
|||||||||| |
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| T |
48025218 |
agattgttgc |
48025209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 234 - 343
Target Start/End: Complemental strand, 48024205 - 48024098
Alignment:
| Q |
234 |
tgttggagattgatatttttgctgtttttgttcattattatctactgttgttttctgtcataattaaagtgttgtttgtttaagtgtaagtgtcataatt |
333 |
Q |
| |
|
|||||||||||||||||||| || |||| ||| |||||| ||||||| ||||||||||||||||||||||||| ||||||| || |||||||||||||| |
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|
| T |
48024205 |
tgttggagattgatattttt-ctctttt-gttaattattttctactgctgttttctgtcataattaaagtgttacttgtttatgtataagtgtcataatt |
48024108 |
T |
|
| Q |
334 |
agattgttgc |
343 |
Q |
| |
|
|||||||||| |
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|
| T |
48024107 |
agattgttgc |
48024098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 234 - 343
Target Start/End: Complemental strand, 48024756 - 48024649
Alignment:
| Q |
234 |
tgttggagattgatatttttgctgtttttgttcattattatctactgttgttttctgtcataattaaagtgttgtttgtttaagtgtaagtgtcataatt |
333 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| |||||| ||||||| |||||||||||||||||||| ||||| |||||| || |||||||||||||| |
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| T |
48024756 |
tgttggagattgatattttta-tgtttt-gttaattattttctactgctgttttctgtcataattaaaatgttgcatgtttatgtataagtgtcataatt |
48024659 |
T |
|
| Q |
334 |
agattgttgc |
343 |
Q |
| |
|
|||||||||| |
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|
| T |
48024658 |
agattgttgc |
48024649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 343
Target Start/End: Complemental strand, 48027496 - 48027389
Alignment:
| Q |
234 |
tgttggagattgatatttttgctgtttttgttcattattatctactgttgttttctgtcataattaaagtgttgtttgtttaagtgtaagtgtcataatt |
333 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||| |||||| | ||||| |||||||| ||||||| |||||||| ||||||| || |||||||||||||| |
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|
| T |
48027496 |
tgttggagattgatattttt-ctgtttt-gttaattattttttactgccgttttctgccataatttaagtgttgcttgtttatgtataagtgtcataatt |
48027399 |
T |
|
| Q |
334 |
agattgttgc |
343 |
Q |
| |
|
|||||||||| |
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|
| T |
48027398 |
agattgttgc |
48027389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 28784499 - 28784563
Alignment:
| Q |
279 |
tgttgttttctgtcataattaaagtgttgtttgtttaagtgtaagtgtcataattagattgttgc |
343 |
Q |
| |
|
|||| |||||| |||||||||| |||||| |||||||||| ||||||| ||| |||||||||||| |
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| T |
28784499 |
tgttattttctctcataattaatgtgttgcttgtttaagtttaagtgttatagttagattgttgc |
28784563 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 48707859 - 48707814
Alignment:
| Q |
279 |
tgttgttttctgtcataattaaagtgttgtttgtttaagtgtaagt |
324 |
Q |
| |
|
|||| ||||||||||||||||| |||||| |||||||||| ||||| |
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| T |
48707859 |
tgttattttctgtcataattaatgtgttgcttgtttaagtttaagt |
48707814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 234 - 343
Target Start/End: Complemental strand, 13109029 - 13108921
Alignment:
| Q |
234 |
tgttggagattgatatttttgctgtttttgttcattattatctactgttgttttctgtcataattaaagtgttgtttgtttaagtgtaagtgtcataatt |
333 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| |||||| || | ||||||||||||||||||||||||||||| ||||||| | |||||||||||||| |
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|
| T |
13109029 |
tgttggagattgatattttttttgtttt-gttaattattttccattgttgttttctgtcataattaaagtgttgcttgtttatttataagtgtcataatt |
13108931 |
T |
|
| Q |
334 |
agattgttgc |
343 |
Q |
| |
|
|||||||||| |
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|
| T |
13108930 |
agattgttgc |
13108921 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 343
Target Start/End: Complemental strand, 13111321 - 13111214
Alignment:
| Q |
234 |
tgttggagattgatatttttgctgtttttgttcattattatctactgttgttttctgtcataattaaagtgttgtttgtttaagtgtaagtgtcataatt |
333 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||| |||| | | ||||| |||||||||||||||||||||||||| ||||||| || ||||| ||||||| |
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|
| T |
13111321 |
tgttggagattgatattttt-ctgtttt-gttaattactttttactgctgttttctgtcataattaaagtgttgcttgtttatgtagaagtgccataatt |
13111224 |
T |
|
| Q |
334 |
agattgttgc |
343 |
Q |
| |
|
|||||||||| |
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|
| T |
13111223 |
agattgttgc |
13111214 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 32797992 - 32798056
Alignment:
| Q |
279 |
tgttgttttctgtcataattaaagtgttgtttgtttaagtgtaagtgtcataattagattgttgc |
343 |
Q |
| |
|
|||| ||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
32797992 |
tgttattttctgtcataattaatgtgttgcttgtttaagtttaagtgtcataattagattgttgc |
32798056 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 32800304 - 32800368
Alignment:
| Q |
279 |
tgttgttttctgtcataattaaagtgttgtttgtttaagtgtaagtgtcataattagattgttgc |
343 |
Q |
| |
|
|||| ||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||| |
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|
| T |
32800304 |
tgttattttctgtcataattaatgtgttgcttgtttaagtttaagtgtcataattagattgttgc |
32800368 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 14662316 - 14662377
Alignment:
| Q |
282 |
tgttttctgtcataattaaagtgttgtttgtttaagtgtaagtgtcataattagattgttgc |
343 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| || |||||||||||||||||| ||||| |
|
|
| T |
14662316 |
tgttttctgtcataattaaagtgttgcttgtttatgtataagtgtcataattagatcgttgc |
14662377 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 45338557 - 45338621
Alignment:
| Q |
279 |
tgttgttttctgtcataattaaagtgttgtttgtttaagtgtaagtgtcataattagattgttgc |
343 |
Q |
| |
|
|||| ||||||||||||||||| |||||| |||||||||| ||||||||||| |||||||||||| |
|
|
| T |
45338557 |
tgttattttctgtcataattaatgtgttgcttgtttaagtttaagtgtcatagttagattgttgc |
45338621 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 45336245 - 45336309
Alignment:
| Q |
279 |
tgttgttttctgtcataattaaagtgttgtttgtttaagtgtaagtgtcataattagattgttgc |
343 |
Q |
| |
|
|||| ||||||||||||||||| |||||| |||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
45336245 |
tgttattttctgtcataattaatgtgttgcttgtgtaagtttaagtgtcatatttagattgttgc |
45336309 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 44731827 - 44731891
Alignment:
| Q |
279 |
tgttgttttctgtcataattaaagtgttgtttgtttaagtgtaagtgtcataattagattgttgc |
343 |
Q |
| |
|
|||| ||||||||||||||||| |||||| |||||||||| ||||||||||| |||||||||||| |
|
|
| T |
44731827 |
tgttattttctgtcataattaatgtgttgcttgtttaagtttaagtgtcatagttagattgttgc |
44731891 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 44734138 - 44734202
Alignment:
| Q |
279 |
tgttgttttctgtcataattaaagtgttgtttgtttaagtgtaagtgtcataattagattgttgc |
343 |
Q |
| |
|
|||| ||||||||||||||||| |||||| |||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
44734138 |
tgttattttctgtcataattaatgtgttgcttgtttaagtttaagtgtcatagttaggttgttgc |
44734202 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 9535241 - 9535305
Alignment:
| Q |
279 |
tgttgttttctgtcataattaaagtgttgtttgtttaagtgtaagtgtcataattagattgttgc |
343 |
Q |
| |
|
|||| |||||||||| |||||| |||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
9535241 |
tgttattttctgtcaaaattaatgtgttgcttgtttaagtttaagtgtcataattagattgttgc |
9535305 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 1550142 - 1550206
Alignment:
| Q |
279 |
tgttgttttctgtcataattaaagtgttgtttgtttaagtgtaagtgtcataattagattgttgc |
343 |
Q |
| |
|
|||| |||| |||||||||||| |||||| |||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
1550142 |
tgttattttatgtcataattaatgtgttgcttgtataagtttaagtgtcatagttagattgttgc |
1550206 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 22804595 - 22804655
Alignment:
| Q |
279 |
tgttgttttctgtcataattaaagtgttgtttgtttaagtgtaagtgtcataattagattg |
339 |
Q |
| |
|
|||| |||||| |||||||||| | |||| |||||||||| |||||| ||||||||||||| |
|
|
| T |
22804595 |
tgttattttctctcataattaatgcgttgcttgtttaagtttaagtgccataattagattg |
22804655 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 339
Target Start/End: Complemental strand, 7231118 - 7231065
Alignment:
| Q |
284 |
ttttctgtcataattaaagtgttgtttgtttaagtgtaagtgtcataattagattg |
339 |
Q |
| |
|
|||||||||||||||| | ||||| |||||||| || |||||||||||||||||| |
|
|
| T |
7231118 |
ttttctgtcataattagattgttgcttgtttaa--gttagtgtcataattagattg |
7231065 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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