View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19774_low_18 (Length: 342)
Name: NF19774_low_18
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 15241661 - 15241908
Alignment:
| Q |
1 |
ttgcagtttgcccccaccctctctagtgccctacctcattccttcatcagcaccattttctcccaaccacaaaccactttgtaatggcaataaatggaag |
100 |
Q |
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| T |
15241661 |
ttgcagtttgcccccaccctctctagtgccctaccccattccttca---gcaccattttctcccaaccacaaaccactttgtaatggcaataaatggaag |
15241757 |
T |
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| Q |
101 |
gttgatctgtaacagtttgttgccacggacaagtaaagaacnnnnnnnnnngtaatccatcaagtataaaacgacaaaataagatcaagatcggtaggaa |
200 |
Q |
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| T |
15241758 |
gttgatctgtaacagtttgttgccacggacaagtaaagaac-aaaaaaaaagtaatccatcaagtataaaacgacaaaataagatcaagatcggtaggaa |
15241856 |
T |
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| Q |
201 |
aagaatggaccgaatcagacaaaaacggtttggcaaatgaatatcataacac |
252 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15241857 |
aagaatggaccgaattagacaaaaacggtttggcaaatgaatatcataacac |
15241908 |
T |
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