View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19774_low_21 (Length: 330)

Name: NF19774_low_21
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19774_low_21
NF19774_low_21
[»] chr1 (1 HSPs)
chr1 (127-317)||(6158971-6159161)
[»] chr4 (2 HSPs)
chr4 (134-306)||(16557388-16557560)
chr4 (193-309)||(40990863-40990980)
[»] chr7 (1 HSPs)
chr7 (127-237)||(4594893-4595003)
[»] chr8 (1 HSPs)
chr8 (127-236)||(23441950-23442059)
[»] chr2 (2 HSPs)
chr2 (127-250)||(41265880-41266002)
chr2 (129-201)||(17318197-17318269)
[»] chr5 (1 HSPs)
chr5 (131-266)||(40118224-40118354)
[»] chr3 (1 HSPs)
chr3 (127-162)||(51386538-51386573)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 127 - 317
Target Start/End: Complemental strand, 6159161 - 6158971
Alignment:
Q  127 actcgtgagaaataaacgtttcatttaaatatatataattcggatggaaatttaataagcaagttcacatagccaagtggcaagtgttaacaatattgtg 226  Q
    |||||||||||||||| |||||| ||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  6159161 actcgtgagaaataaatgtttcagttaaatatatatagttcagatggaaatttaacaagcaagttcacatagccaagtggaaagtgttaacaatattgtg 6159062  T
Q  227 gtgcatgtacttggttcaactcccactaaccacaatttgataactttttataaaataatcatttagaatctagtccggttcgctcacccct 317  Q
    |||||||||||  ||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6159061 gtgcatgtactcagttcaactcccactaaccataattttataattttttataaaataatcatttagaatctagtccggttcgctcacccct 6158971  T

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Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 134 - 306
Target Start/End: Complemental strand, 16557560 - 16557388
Alignment:
Q  134 agaaataaacgtttcatttaaatatatataattcggatggaaatttaataagcaagttcacatagccaagtggcaagtgttaacaatattgtggtgcatg 233  Q
    |||||||||||||||| ||||||||||||| ||| |||| |||||||| ||||||||||| |||  ||||||| ||||||||||||||||||| ||||||    
T  16557560 agaaataaacgtttcacttaaatatatatagttcagatgaaaatttaacaagcaagttcatataaacaagtggtaagtgttaacaatattgtgttgcatg 16557461  T
Q  234 tacttggttcaactcccactaaccacaatttgataactttttataaaataatcatttagaatctagtccggtt 306  Q
     ||| | ||||| ||| |||| ||||| |||||||  ||||||||||||||||||||| ||| | ||||||||    
T  16557460 aactcgattcaattcctactagccacagtttgatatttttttataaaataatcatttacaatttggtccggtt 16557388  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 309
Target Start/End: Complemental strand, 40990980 - 40990863
Alignment:
Q  193 acatagccaagtggcaagtgttaacaatattgtggtgcatgtacttggttcaactcccactaaccacaatttgataa-ctttttataaaataatcattta 291  Q
    |||||||  ||||| ||||||||| |||||| || |||||||||  || ||||||||||||| ||||||||||||||  ||||||||||||| |||||||    
T  40990980 acatagctgagtggtaagtgttaaaaatattatgctgcatgtacccggatcaactcccactagccacaatttgataatttttttataaaatattcattta 40990881  T
Q  292 gaatctagtccggttcgc 309  Q
    ||||   |||||||||||    
T  40990880 gaattcggtccggttcgc 40990863  T

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Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 127 - 237
Target Start/End: Complemental strand, 4595003 - 4594893
Alignment:
Q  127 actcgtgagaaataaacgtttcatttaaatatatataattcggatggaaatttaataagcaagttcacatagccaagtggcaagtgttaacaatattgtg 226  Q
    ||||||||||||||||||||||  ||||||||||||| |||  || ||||||||| |||||| ||||||||||||| ||| |||||||||||||||||||    
T  4595003 actcgtgagaaataaacgtttcggttaaatatatatagttcatatagaaatttaacaagcaaattcacatagccaaatggtaagtgttaacaatattgtg 4594904  T
Q  227 gtgcatgtact 237  Q
    |||||||||||    
T  4594903 gtgcatgtact 4594893  T

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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 23441950 - 23442059
Alignment:
Q  127 actcgtgagaaataaacgtttcatttaaatatatataattcggatggaaatttaataagcaagttcacatagccaagtggcaagtgttaacaatattgtg 226  Q
    |||||| |||||||||||||||| ||||||||||||| |||  |||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||    
T  23441950 actcgtaagaaataaacgtttcagttaaatatatatagttcaaatggaaatttaacaagcaagttcacacacccaagtggtaagtgttaacaatattgtg 23442049  T
Q  227 gtgcatgtac 236  Q
     |||||||||    
T  23442050 ctgcatgtac 23442059  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 250
Target Start/End: Complemental strand, 41266002 - 41265880
Alignment:
Q  127 actcgtgagaaataaacgtttcatttaaatatatataattcggatggaaatttaataagcaagttcacatagccaagtggcaagtgttaacaatattgtg 226  Q
    ||||||||||||||||||||||| ||||||||||||| ||| |||  |||||||| |||||||||||||||||||| | | |||||||||||||||| ||    
T  41266002 actcgtgagaaataaacgtttcagttaaatatatata-ttcagataaaaatttaacaagcaagttcacatagccaaatagtaagtgttaacaatattatg 41265904  T
Q  227 gtgcatgtacttggttcaactccc 250  Q
     |  |||||  |||||||||||||    
T  41265903 ttaaatgtatctggttcaactccc 41265880  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 17318269 - 17318197
Alignment:
Q  129 tcgtgagaaataaacgtttcatttaaatatatataattcggatggaaatttaataagcaagttcacatagcca 201  Q
    ||||||||||||||||||| | ||||||||||||| ||| ||||||||||||| |||||||||||||||||||    
T  17318269 tcgtgagaaataaacgtttaagttaaatatatatagttcagatggaaatttaacaagcaagttcacatagcca 17318197  T

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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 131 - 266
Target Start/End: Original strand, 40118224 - 40118354
Alignment:
Q  131 gtgagaaataaacgtttcatttaaatatatataattcggatggaaatttaataagcaagttcacatagccaagtggcaagtgttaacaatattgtggtgc 230  Q
    |||||||||||||| |||| ||||||| ||||| ||| ||||||||||||| ||| | |||||||||| |||| || |||| |||||||||||    |||    
T  40118224 gtgagaaataaacgcttcaattaaatacatatagttcagatggaaatttaacaagtatgttcacatagtcaagcggtaagt-ttaacaatatt----tgc 40118318  T
Q  231 atgtacttggttcaactcccactaaccacaatttga 266  Q
    ||||||  ||||||||||||||| ||  ||||||||    
T  40118319 atgtacccggttcaactcccacttactccaatttga 40118354  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 162
Target Start/End: Complemental strand, 51386573 - 51386538
Alignment:
Q  127 actcgtgagaaataaacgtttcatttaaatatatat 162  Q
    ||||||||||||||||||||||| ||||||||||||    
T  51386573 actcgtgagaaataaacgtttcagttaaatatatat 51386538  T

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