View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19774_low_22 (Length: 319)
Name: NF19774_low_22
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 13 - 317
Target Start/End: Complemental strand, 24147970 - 24147664
Alignment:
| Q |
13 |
aatattcatcggtggggtatccttgttagtcacaatcctctttggaagattgtctttagacttcaaaagataaacacacgtttgtagaacccgagtaaaa |
112 |
Q |
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| T |
24147970 |
aatattcatcggtggggtatccttgttagtcacaatcctctttagaagattgtctttagacttcaaaagataaacacacgtttgtagaacccaagtaaaa |
24147871 |
T |
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| Q |
113 |
ttatcctccttttcaaatgtcnnnnnnnnnnnnctgacataaagtgtcaagtctcaggtctat--aagtgatttctaccacctcaaacaatggcattttg |
210 |
Q |
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| T |
24147870 |
ttatcctctttttcagatgtcaaaaaagaaaaactgacataaagtgtcaagtctcacgtatgttaaagtgattcctaccacctcaaacaatggttttttg |
24147771 |
T |
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| Q |
211 |
tactgattgattttataggtcgagtctaacaacaaaacaatatgaatattgttaaataattttagggattcgtaatgtgaccaaaaatatactaaaaagt |
310 |
Q |
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| T |
24147770 |
tcatgattgattttataggtcgagtctaacaacaaaacaatatgaatattgttaaacaattttagggattcgtgatgtgaccaaaaatatgctaaaaagt |
24147671 |
T |
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| Q |
311 |
tagagtc |
317 |
Q |
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| T |
24147670 |
tatagtc |
24147664 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 13675808 - 13675870
Alignment:
| Q |
40 |
agtcacaatcctctttggaagattgtctttagacttcaaaagataaacacacgtttgtagaac |
102 |
Q |
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| T |
13675808 |
agtcacaatcatctttggaatattatctttagacttcataagatcaagagacatttgtagaac |
13675870 |
T |
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