View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19774_low_24 (Length: 306)
Name: NF19774_low_24
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_low_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 51011147 - 51011277
Alignment:
| Q |
1 |
gttttgtgaaattgatggatgctttcaacactttaggcatggatgtaatgcatgccacagtaaccagtcataagggtcttgtctcaaatgtttttaaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51011147 |
gttttgtgaaattgatggatgctttcaacactttaggcatggatgtaatgcatgccacagtaaccagtcataagggtcttgtctcaaatgtttttaaagt |
51011246 |
T |
|
| Q |
101 |
tgaggtaaatataatataccttcaaaacatt |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
51011247 |
tgaggtaaatataatataccttcaaaacatt |
51011277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 171 - 288
Target Start/End: Original strand, 51011379 - 51011491
Alignment:
| Q |
171 |
atgaatttgttagactacatcaaatcaattcaaagtatgatgtgataataatgatactaatatttcttactaacagaaaaaggagagtgagatagttgag |
270 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51011379 |
atgaatttgttagactacatcaaatcaa-----agtatgatgtgataataatgatactaatatttcttactaacagaaaaaggagagtgagatagttgag |
51011473 |
T |
|
| Q |
271 |
gctgaagaagttagagat |
288 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
51011474 |
gctgaagaagttagagat |
51011491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University