View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19774_low_26 (Length: 296)
Name: NF19774_low_26
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 26734436 - 26734207
Alignment:
| Q |
1 |
atacaacattggaaaaaacacccagaggccaaaaaggaggcgcatccataaacagctaaacaacctaaaaggtactcactatactaatcaccaccacagt |
100 |
Q |
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| T |
26734436 |
atacaacattggaaaaaacacccagaggccaaaaaggaggcgcatccataaacagctaaacaacctaaaaggtactcactatactaatcaccaccataat |
26734337 |
T |
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| Q |
101 |
aacattatcccttacacagcgacatcccacctttacaaaatgtaaaaacaccacaacagtgtcaaatacaaagacaagaaaacccagagaatgatagagc |
200 |
Q |
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| T |
26734336 |
aacattatcccttacacagtgacatcccacccttacaaaacgtaaaaacaccacaacagtgtcaaatacagagacaagaaaacccagagaatgatagagc |
26734237 |
T |
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| Q |
201 |
cgtttggccactgccaccccacccccaatt |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
26734236 |
cgtttggccactgccaccccacccccaatt |
26734207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 26734192 - 26734159
Alignment:
| Q |
245 |
cagcatccaacacataaacttttacaccgcattt |
278 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
26734192 |
cagcatccaacacataaacttttacacctcattt |
26734159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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