View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19774_low_27 (Length: 290)
Name: NF19774_low_27
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 63 - 275
Target Start/End: Complemental strand, 45802816 - 45802605
Alignment:
| Q |
63 |
ggtattaggcgcatgttatttaannnnnnnggggttatgttggatataatcattagagttttatatttttaagcagttggataatatatttaatttacga |
162 |
Q |
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| T |
45802816 |
ggtatcaggcgcatgttatttaatttttttggggttatgttggatataatcattagagttttatatttttaagcagttggataatatatttaatttacga |
45802717 |
T |
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| Q |
163 |
ctagtgtatgatggaatgcaactcaagcgccataaatagttttatgtnnnnnnnnngcaatgaagaaaggaggtagattctaacaaaagtaaatgacgtt |
262 |
Q |
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| T |
45802716 |
ctagtgtatgatggaatgcaactcaagcgccataaatagttttatgt-aaaaaaaagcaatgaagaaaggaggtagattctaacaaaagtaaacgacgtt |
45802618 |
T |
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| Q |
263 |
gattaagcataac |
275 |
Q |
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| T |
45802617 |
gattaagcataac |
45802605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 45805444 - 45805393
Alignment:
| Q |
18 |
tggaagagggtaaataactaagattacgatttccttaaaaaaccaggtatta |
69 |
Q |
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| T |
45805444 |
tggaagagggtaaataaccaagattacgatttccttaaaaaaccagctatta |
45805393 |
T |
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