View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19774_low_29 (Length: 273)
Name: NF19774_low_29
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 24618378 - 24618577
Alignment:
| Q |
1 |
aaaaagaccaacagaagaattcttctttgaaggaagaagatgatcctgtggttgagtttaatgatgagattgatcaggtcttgcaggaaaaaattgacag |
100 |
Q |
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| T |
24618378 |
aaaaagaccaacagaagaattcttctttgaaggaagaagatgatcctgtggttgagtttaatgatgagattgatcaggtcttgcaggaaaaaattgacag |
24618477 |
T |
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| Q |
101 |
ggaagtggaagaatttgcacgcagattaaactgtgcttgggaagagaggaaaatagaaattcttagaggtgctggcaatcacaaggaaattattgcatag |
200 |
Q |
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| T |
24618478 |
ggaagtggaagaatttgcacgcagattaaactgtgcttgggaagagaggaaaatagaaattcttagaggtgctggcaatcacaaggaaattattgcatag |
24618577 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 1343990 - 1344188
Alignment:
| Q |
1 |
aaaaagaccaacagaagaattcttctttgaaggaagaagatgatcctgtggttgagtttaatgatgagattgatcaggtcttgcaggaaaaaattgacag |
100 |
Q |
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| T |
1343990 |
aaaaagatcaacagaagaattcttctttgaaggaagaagatgatcttgtggttgagtttgatgatgagattgatcaggccttacaggaaagaattgacag |
1344089 |
T |
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| Q |
101 |
ggaagtggaagaatttgcacgcagattaaactgtgcttgggaagagaggaaaatagaaattcttagaggtgctggcaatcacaaggaaattattgcata |
199 |
Q |
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| T |
1344090 |
ggaagtcgaagaatttgcacgcagattaaattgttcttgggaagagagaaaaaaagaaattcttagagatgctggcaatcacagggaaattattgcata |
1344188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 1355597 - 1355399
Alignment:
| Q |
1 |
aaaaagaccaacagaagaattcttctttgaaggaagaagatgatcctgtggttgagtttaatgatgagattgatcaggtcttgcaggaaaaaattgacag |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||| ||||||| ||||||||| |
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| T |
1355597 |
aaaaagatcaacagaagaattcttctttgaaggaagaagatgatcttgtggttgagtttgatgatgagattgatcaggccttacaggaaagaattgacag |
1355498 |
T |
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| Q |
101 |
ggaagtggaagaatttgcacgcagattaaactgtgcttgggaagagaggaaaatagaaattcttagaggtgctggcaatcacaaggaaattattgcata |
199 |
Q |
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| T |
1355497 |
ggaagtcgaagaatttgcacgcagattaaattgttcttgggaagagagaaaaaaagaaattcttagagatgctggcaatcacagggaaattattgcata |
1355399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 1361100 - 1361261
Alignment:
| Q |
1 |
aaaaagaccaacagaagaattcttctttgaaggaagaagatgatcctgtggttgagtttaatgatgagattgatcaggtcttgcaggaaaaaattgacag |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||||||||||||||| | ||| || | ||||| |
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| T |
1361100 |
aaaaagaccaacagaagaattcttctatgaaggaagaagagggtcctgtggttgagtttgatgatgagattgatcatgactt------aatgactgacaa |
1361193 |
T |
|
| Q |
101 |
ggaagtggaagaatttgcacgcagattaaactgtgcttgggaagagaggaaaatagaaattcttagag |
168 |
Q |
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||||||||||||||||| ||||||||||| ||| || | |||||||| | || |||||||||||||| |
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| T |
1361194 |
agaagtggaagaatttgcgcgcagattaaattgtactcgcgaagagagaataaaagaaattcttagag |
1361261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11368949 - 11368983
Alignment:
| Q |
1 |
aaaaagaccaacagaagaattcttctttgaaggaa |
35 |
Q |
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| T |
11368949 |
aaaaagaccaacagaagaattcttctttgaaggaa |
11368983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 1350480 - 1350556
Alignment:
| Q |
33 |
gaagaagatgatcctgtggttgagtttaatgatgagattgatcaggtcttgcaggaaaaaattgacagggaagtgga |
109 |
Q |
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|||||||| |||| ||||||||||||| ||||| |||||||||||| ||| || ||||||||||| | ||||||| |
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| T |
1350480 |
gaagaagaggatcatgtggttgagtttgatgataagattgatcaggccttaacggcaaaaattgacaagcaagtgga |
1350556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 1350559 - 1350603
Alignment:
| Q |
34 |
aagaagatgatcctgtggttgagtttaatgatgagattgatcagg |
78 |
Q |
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| T |
1350559 |
aagaagatgatcctagggttgagtttgatgatgagattgatcagg |
1350603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 1350615 - 1350687
Alignment:
| Q |
96 |
gacagggaagtggaagaatttgcacgcagattaaactgtgcttgggaagagaggaaaatagaaattcttagag |
168 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||| || ||| ||||||||| | || ||||| |||||||| |
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| T |
1350615 |
gacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaagaaactcttagag |
1350687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 1350436 - 1350475
Alignment:
| Q |
1 |
aaaaagaccaacagaagaattcttctttgaaggaagaaga |
40 |
Q |
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|||||||||||||||||||||||||| |||| |||||||| |
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| T |
1350436 |
aaaaagaccaacagaagaattcttctatgaaagaagaaga |
1350475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 43364537 - 43364468
Alignment:
| Q |
61 |
atgatgagattgatcaggtcttgcaggaaaaaattgacagggaagtggaagaatttgcacgcagattaaa |
130 |
Q |
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||||||||||||||| || ||| || | || |||||| |||||||||||||||||||| ||||||||||| |
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| T |
43364537 |
atgatgagattgatccggccttacaagcaagaattgatagggaagtggaagaatttgcccgcagattaaa |
43364468 |
T |
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