View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19774_low_3 (Length: 595)
Name: NF19774_low_3
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 3 - 583
Target Start/End: Complemental strand, 41717856 - 41717279
Alignment:
| Q |
3 |
ccccctgcacccaagcatcacaatactcacgaaccctactggtaaagttcatgttatagacttctatttaaatattaagcaactgtatggatctgttaat |
102 |
Q |
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| T |
41717856 |
ccccctgcacccaagcatcacaatactcacgaaccttactggtaaagttcatgttacagacttctatttaaatattaagcaactgtatggatctgttaat |
41717757 |
T |
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| Q |
103 |
cagggtcctgcttcttactcatgctgtacctttttcttgattagttacacattctggtcaaaattaatcaagagtttcaaacctaaggttaccatgtttt |
202 |
Q |
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| T |
41717756 |
---ggtcctgcttcttactcatgctgtacctttttcttgattagttacacattctggtcaaaattaatcaagagtttcaaacctaaggttaccatgtttt |
41717660 |
T |
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| Q |
203 |
tagttgactgagcatactagctaaagttgttttattatgggtttgggagactcaataaatcacgacagtaccacaaggtcaaacaactctacagtttgtt |
302 |
Q |
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| T |
41717659 |
tagttgactgagcatactagctaaagttgttttattatgggtttgggagactcaataaatcacgacagtaccacaaggtcaaacaactctacagtttgtt |
41717560 |
T |
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| Q |
303 |
gcttttgtattttcgtgttgatttgacattgagacacgagaaagccttctctgatgaccatctaaacatttgattagttttgtagctgctttaatattcg |
402 |
Q |
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| T |
41717559 |
gcttttgtattttcgtgttgatttgacattgagacatgagaaagccttctctgatgaccatctaaacatttgattagttgtgtagctgctttaatattcg |
41717460 |
T |
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| Q |
403 |
atatcagtttcagcatacctgattatatttgtggaaaattcagctctggtggggtggtgttggcttctcgtgatggaaagattgtgtgtgaaaatactct |
502 |
Q |
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| T |
41717459 |
atatcagtttcagcatacctgattatatttgtggaaaattcagctctggtggggtggtgttggcttctcgtgatggaaagattgtgtgtgaaaatactct |
41717360 |
T |
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| Q |
503 |
tgatgcacggctggatgtagtgttccgtaaaaagcttccggaggtaaatttttgtgtgcattgctattgtcatgttctgtg |
583 |
Q |
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| T |
41717359 |
tgatgcacggctggatgtagtgttccgtaaaaagcttccggaggtaattttttgtgtgcattgctattgtcatgttctgtg |
41717279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 441 - 532
Target Start/End: Original strand, 2420846 - 2420937
Alignment:
| Q |
441 |
ttcagctctggtggggtggtgttggcttctcgtgatggaaagattgtgtgtgaaaatactcttgatgcacggctggatgtagtgttccgtaa |
532 |
Q |
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| T |
2420846 |
ttcagctctggaggtgtggtattggcttctcatgatggaaagattgtgtttgaaaatacacttgatgcgcgtttggatgtagtattccgtaa |
2420937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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