View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19774_low_30 (Length: 267)
Name: NF19774_low_30
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 31160483 - 31160246
Alignment:
| Q |
13 |
aagaatatggtggctaggatgagataaggaagctctagctattgtgttcaattttattaaaaaataaatttgtgtagatatattatagtttattttggct |
112 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31160483 |
aagaatatggtggctaggatgagataaggaagttttagctattgtgttcaattttattaaaaaattaatttgtgtagatatattatagtttattttggct |
31160384 |
T |
|
| Q |
113 |
gtccatccgaatattttggatgtttttatatttggtccttcccttgtcacactattcatcgactgcttcttttatattccattgtctcctcattaataga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31160383 |
gtccatccgaatattttggatgtttttatatttggtccttcccttgtcacactattcatcgactgcttcttttatattccattgtctcctcattaataga |
31160284 |
T |
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| Q |
213 |
tagatctcctcggtaatccattcatcaactaattattt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
31160283 |
tagatctcctcggtaatccattcatcaactaattattt |
31160246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 10813145 - 10813180
Alignment:
| Q |
19 |
atggtggctaggatgagataaggaagctctagctat |
54 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
10813145 |
atgggggctaggatgagataaggaagctctagctat |
10813180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 54548327 - 54548362
Alignment:
| Q |
19 |
atggtggctaggatgagataaggaagctctagctat |
54 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
54548327 |
atgggggctaggatgagataaggaagctctagctat |
54548362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 14453398 - 14453435
Alignment:
| Q |
17 |
atatggtggctaggatgagataaggaagctctagctat |
54 |
Q |
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|||||| ||||||||||||||||||| ||||||||||| |
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| T |
14453398 |
atatgggggctaggatgagataaggatgctctagctat |
14453435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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