View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19774_low_31 (Length: 260)
Name: NF19774_low_31
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 23134251 - 23134484
Alignment:
| Q |
10 |
caagaatattttcatgatataattaaataaagtataaaaagtgtcaaatagcatagttcaacttctaaattttcttatagcttaccatcgagtactgaac |
109 |
Q |
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| T |
23134251 |
caagaatattttcattatataattaaataaagtataagaagtgtcaaatagcatagttctacttctaaattttcttatagcttaccatcaagtactgaac |
23134350 |
T |
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| Q |
110 |
cttcagatgcatcctcatatgcccatttacaagcatctttgctactttcagtagcatatctgaaaaaatagaccaaagttaagtacctggtttctaactt |
209 |
Q |
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| T |
23134351 |
cttcagatgcatcctcatatgcccatttacaagcatctttgctactttcagtagcatatctgaaaaaatagaccaaagttaagtacctgttttctaactt |
23134450 |
T |
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| Q |
210 |
ttaagattgtaatggaattttttcaatacataat |
243 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
23134451 |
ttaagcttgtaatggaattttttcaatacataat |
23134484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 23143297 - 23143373
Alignment:
| Q |
109 |
ccttcagatgcatcctcatatgcccatttacaagcatctttgctactttcagtagcatatctgaaaaaatagaccaa |
185 |
Q |
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|||||||||||||| | ||||||||||||||| || ||| |||||| |||| ||||||||||||||| |||||||| |
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| T |
23143297 |
ccttcagatgcatctttatatgcccatttacaggcgtctacgctactctcagaagcatatctgaaaaattagaccaa |
23143373 |
T |
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