View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19774_low_35 (Length: 246)
Name: NF19774_low_35
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 106 - 217
Target Start/End: Original strand, 9884007 - 9884118
Alignment:
| Q |
106 |
aagtgagggagattctttcctgcagattttaatgaggtgtggggtcaacctccatgcgtgatttctgaatttctagcacgataaacacaatttggttagc |
205 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9884007 |
aagtcagggagattctttcctgcagattttaatgaggtgtggggtcaacctccatgcgtgatttctgaatttctagcacaataaacacaatttggttagc |
9884106 |
T |
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| Q |
206 |
aaacatatatat |
217 |
Q |
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| T |
9884107 |
aaacatatatat |
9884118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 9867821 - 9867706
Alignment:
| Q |
17 |
agacctttcaaaaagaaagctcataacacagattcatcacctttaatggaaggtgatggaagatcactaaaagtgcttagttttactcaaagtgagggag |
116 |
Q |
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| T |
9867821 |
agaccttccaaaaagaaagctcataacacagatccaccgcctttaatagaatgtgatggaagatcactaaaagtgcttggttatactcaaagtcagacag |
9867722 |
T |
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| Q |
117 |
attctttcctgcagat |
132 |
Q |
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| T |
9867721 |
cttctttccttcagat |
9867706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 9887488 - 9887410
Alignment:
| Q |
163 |
gtgatttctgaatttctagcacga-taaacacaatttggttagcaaacatat--atatcaagcaaatcagagaataatc |
238 |
Q |
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| T |
9887488 |
gtgatttctgaatttccaacacaaataaacacaatttggttagcaaacatatatatatcaagcaaagcagagaataatc |
9887410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 9883966 - 9884006
Alignment:
| Q |
17 |
agacctttcaaaaagaaagctcataacacagattcatcacc |
57 |
Q |
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| T |
9883966 |
agacctttcaaaaagaaagctcataacacagattcatcacc |
9884006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 1520608 - 1520541
Alignment:
| Q |
39 |
ataacacagattcatcacctttaatggaaggtgatggaagatcactaaaagtgcttagttttactcaa |
106 |
Q |
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| T |
1520608 |
ataacacaaatccaccacctttaatggaaggtgaaggaagatcgctaaaagttcttggttttactcaa |
1520541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 2912395 - 2912309
Alignment:
| Q |
57 |
ctttaatggaaggtgatggaagatcactaaaagtgcttagttttactcaaagtgagggagattctttcctgcagattttaatgaggt |
143 |
Q |
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||||||||||||| || |||| ||||||||||||| | ||||||||||| || || ||| | ||||||| ||| |||||||||||| |
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| T |
2912395 |
ctttaatggaaggcgaaggaaaatcactaaaagtgataggttttactcaacgtcagagagctgctttccttcagcttttaatgaggt |
2912309 |
T |
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