View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19774_low_38 (Length: 241)
Name: NF19774_low_38
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 17872715 - 17872634
Alignment:
| Q |
18 |
gacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggtaatgtcaacgtacatgtctagtttcaatattgag |
99 |
Q |
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| T |
17872715 |
gacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggtaatgtcaacgtacatgtctagtttcaatattgag |
17872634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 17862140 - 17862059
Alignment:
| Q |
18 |
gacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggtaatgtcaacgtacatgtctagtttcaatattgag |
99 |
Q |
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| T |
17862140 |
gacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggtaatgtcaatgtacatgtctagtttcaatattgag |
17862059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 17872390 - 17872333
Alignment:
| Q |
173 |
ctcatgatataacattgtaatacctttaagttctttgctaaaattgtattggtatatt |
230 |
Q |
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| T |
17872390 |
ctcatgatataacattgtaatacctttaatttttttgctaaaattgtattggtatatt |
17872333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 45036342 - 45036293
Alignment:
| Q |
17 |
agacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggta |
66 |
Q |
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| T |
45036342 |
agacaaaatcaagcaaaaagctatgaaagcagtctctggcctttcaggta |
45036293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 45041624 - 45041579
Alignment:
| Q |
21 |
agaaccaagcaaaaagctatgaagacagtctctggcctttcaggta |
66 |
Q |
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| T |
45041624 |
agaatcaagcaaaaggctatgaaggcagtctctggcctttcaggta |
45041579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 45043702 - 45043653
Alignment:
| Q |
17 |
agacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggta |
66 |
Q |
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||||| || ||| ||||||||||||||| |||||||||||||||| |||| |
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| T |
45043702 |
agacaaaatcaaacaaaaagctatgaaggcagtctctggcctttccggta |
45043653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 46175794 - 46175757
Alignment:
| Q |
30 |
caaaaagctatgaagacagtctctggcctttcaggtaa |
67 |
Q |
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| T |
46175794 |
caaaaagctatgaaggcagtctctggcctctcaggtaa |
46175757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 11390404 - 11390449
Alignment:
| Q |
21 |
agaaccaagcaaaaagctatgaagacagtctctggcctttcaggta |
66 |
Q |
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|||| ||||||||||| |||||||||||| ||| |||||||||||| |
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| T |
11390404 |
agaatcaagcaaaaagttatgaagacagtatctagcctttcaggta |
11390449 |
T |
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