View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19774_low_39 (Length: 239)
Name: NF19774_low_39
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42553540 - 42553760
Alignment:
| Q |
1 |
ttatcaacttccataacaccaacactattaacatcacaattactaatcatagtttgttccttactgtcctcaactacggcaaatgccaaagcagcctccg |
100 |
Q |
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| T |
42553540 |
ttatcaacttccataacaccaacactattaacatcacaattactaatcatagtttgttccttactgtccgcaactacggcaaatgccaaagcagcctccg |
42553639 |
T |
|
| Q |
101 |
ccgccattttcctaatctccttcgcattgttcgtcgccggcaacgctaaccgccacgtagagtcagcaaaattaagacaagctgatttaccgcgaagtgc |
200 |
Q |
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| T |
42553640 |
ccgccattttcctaatctccttcgcattgttcgtcgccggcaacgctaaccgccacgcagagtcagcaaaattaagacaagctgatttaccgcgaagtgc |
42553739 |
T |
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| Q |
201 |
cagcgcggcaacgtcgtgtgc |
221 |
Q |
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||| ||||||||||||||||| |
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| T |
42553740 |
cagtgcggcaacgtcgtgtgc |
42553760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 3030590 - 3030539
Alignment:
| Q |
137 |
ccggcaacgctaaccgccacgtagagtcagcaaaattaagacaagctgattt |
188 |
Q |
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| T |
3030590 |
ccggcaacgtcaaccgccatgcagagtcagcaaaattaagacaagctgattt |
3030539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 188
Target Start/End: Complemental strand, 3021403 - 3021325
Alignment:
| Q |
110 |
tcctaatctccttcgcattgttcgtcgccggcaacgctaaccgccacgtagagtcagcaaaattaagacaagctgattt |
188 |
Q |
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| T |
3021403 |
tccttatctccgtcgcatcattcgactccggcaacctcaaccgccatgcagagtcagcaaaattaagacaagctgattt |
3021325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 188
Target Start/End: Complemental strand, 3038272 - 3038194
Alignment:
| Q |
110 |
tcctaatctccttcgcattgttcgtcgccggcaacgctaaccgccacgtagagtcagcaaaattaagacaagctgattt |
188 |
Q |
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|||| |||||| |||||| |||| | |||||||| |||||||| | |||||||||||||||||||||||||||||| |
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| T |
3038272 |
tccttatctccgtcgcatcattcgactccggcaacctcaaccgccatgcagagtcagcaaaattaagacaagctgattt |
3038194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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