View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19774_low_4 (Length: 530)
Name: NF19774_low_4
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 223 - 515
Target Start/End: Complemental strand, 1906984 - 1906680
Alignment:
| Q |
223 |
cgactttccctccctaaaggtagaggatctttgtctatatattgtccgagtaagttagttttaca------------gaagacgttcgttttcctttgac |
310 |
Q |
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| T |
1906984 |
cgactttccctccctgaaggtagaggatctttgtctatatattgtccgagtaagttagttttacaatgacataactagaagacgtttgttttcctttgac |
1906885 |
T |
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| Q |
311 |
gcgttatattttttaaaatgtagtaataaaagtagagtgatgtaacaaaataatgaatttttattgggtatcatatcctttaatctaaaattaattacta |
410 |
Q |
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| T |
1906884 |
gcgttatattttttaaaatgtagtaataaaagtagagtgatgtaacaaaataatgaatttttattgggtatcatatcctttaatctaaaattaattacta |
1906785 |
T |
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| Q |
411 |
ttttacactatgaatgcataattattatgttctgttgttgcttttgtattttaggttcacacgagtacattgaagtgattgcaagcacaacaacaaggaa |
510 |
Q |
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| T |
1906784 |
ttttacactatgaatgcataattattatgttctgttgttgcttttgtattttaggttcacacgaatacattgaagtgattgcaagcacaacaacaaggaa |
1906685 |
T |
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| Q |
511 |
gaaac |
515 |
Q |
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||||| |
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| T |
1906684 |
gaaac |
1906680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 1907206 - 1907067
Alignment:
| Q |
1 |
taaatagttattataaagtttggacattccacattttacaatctaatattaaagggtttaattagatccaatatacaagatagagtttattagacacata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1907206 |
taaatagttattataaagtttggacattccacattttacaatctaatattaaagggttgaattagatccaatatacaagatagagtttattagacacata |
1907107 |
T |
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| Q |
101 |
ttgcggatttggattctctaccttttggtgactttaggct |
140 |
Q |
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| T |
1907106 |
ttgcggatttggattctctaccttttggtgactttaggct |
1907067 |
T |
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