View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19774_low_44 (Length: 229)

Name: NF19774_low_44
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19774_low_44
NF19774_low_44
[»] chr6 (4 HSPs)
chr6 (19-96)||(33674452-33674529)
chr6 (21-82)||(33692871-33692932)
chr6 (23-82)||(33685646-33685705)
chr6 (24-82)||(33663857-33663915)
[»] scaffold0016 (2 HSPs)
scaffold0016 (21-82)||(86846-86907)
scaffold0016 (21-85)||(103512-103576)


Alignment Details
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 33674452 - 33674529
Alignment:
Q  19 gtagcatcaacatcattgaggatttctagaaccttttgcatggtggaaacatcgttgtggtggcagctatggcggtgg 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33674452 gtagcatcaacatcattgaggatttctagaaccttttgcatggtggaaacatcgttgtggtggcagctatggcggtgg 33674529  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 33692871 - 33692932
Alignment:
Q  21 agcatcaacatcattgaggatttctagaaccttttgcatggtggaaacatcgttgtggtggc 82  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||    
T  33692871 agcatcaacatcattgaggatttcaagaaccttttgaatggtggaaacatcgttgcggtggc 33692932  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 33685646 - 33685705
Alignment:
Q  23 catcaacatcattgaggatttctagaaccttttgcatggtggaaacatcgttgtggtggc 82  Q
    |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  33685646 catcaatatcattgaggatttctagaaccttttgaatggttgaaacatcgttgtggtggc 33685705  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 33663857 - 33663915
Alignment:
Q  24 atcaacatcattgaggatttctagaaccttttgcatggtggaaacatcgttgtggtggc 82  Q
    |||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||    
T  33663857 atcaacatcattaagaatttctagaaccttttgaatggtggaaacatcgttgtggtggc 33663915  T

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Target: scaffold0016 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 86907 - 86846
Alignment:
Q  21 agcatcaacatcattgaggatttctagaaccttttgcatggtggaaacatcgttgtggtggc 82  Q
    ||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  86907 agcatcaacttcattaaggatttctagaaccttttgaatggtggaaacatcgttgtggtggc 86846  T

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Target: scaffold0016; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 103576 - 103512
Alignment:
Q  21 agcatcaacatcattgaggatttctagaaccttttgcatggtggaaacatcgttgtggtggcagc 85  Q
    ||||||||| | |||||| ||||||| ||||||||| |||||||||||||| | |||||||||||    
T  103576 agcatcaactttattgagaatttctaaaaccttttgaatggtggaaacatcatcgtggtggcagc 103512  T

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