View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19774_low_5 (Length: 514)
Name: NF19774_low_5
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 14 - 496
Target Start/End: Original strand, 3124949 - 3125436
Alignment:
| Q |
14 |
ataggacaaagaaaatacataaagaagaagaaacgtgaatctttcaaactttctctgtatcataataata---gacatagtaatattccttcaccgggtc |
110 |
Q |
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| T |
3124949 |
ataggacaaagaaaatacataaagaagaagaaacgtgaatctttcaaactttttctgtatcataataataatagacatagtaatattccttcaccgggtc |
3125048 |
T |
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| Q |
111 |
agaaaacgtaacaaacactttacacggacagttaaaagaaagagacacaaccttaccacacctaataataacaacagagaacaaaaaa--tagtgtgcat |
208 |
Q |
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| T |
3125049 |
agaaaacgtaacaaacactttacacggacagttaaaagaaagagacacaaccttaccacacctaataataacaacagagaacaaaaaaaatagtgtgcat |
3125148 |
T |
|
| Q |
209 |
acatgaaattccagaaatttacagcaaccagct--tttttgaaataaaactatgttacatttcagtaaaaaccaattaaccataataatatctactatta |
306 |
Q |
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| T |
3125149 |
acatgaaattccagaaatttacagcaaccagctcttttttgaaataaaactatgttacatttcagtaaaaaccaattaaccataataatatctactatta |
3125248 |
T |
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| Q |
307 |
tatctcttggtgcatctcattggagggtctacagtacactctatcagcaatcagcaaatagagtaattagtacatatattataacatatagttgtgtgtt |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3125249 |
tatctcttggtgcatctcattggagggtctacagtacactctatcagcaatcagcaaatagagtaattagtac--atattataacatatagttgtgtgtt |
3125346 |
T |
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| Q |
407 |
accagctggtaattaggaacaaaataatatgatgatgattcatgactaattactacctcttgcgtttcgacttcaaagaggtgacagatt |
496 |
Q |
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| T |
3125347 |
accagctggtaattaggaacaaaataatatgatgatgattcatgactaattactacctcttgcgtttcgacttcaaagaggtgacagatt |
3125436 |
T |
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