View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19774_low_6 (Length: 476)
Name: NF19774_low_6
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 60 - 460
Target Start/End: Original strand, 40821445 - 40821840
Alignment:
| Q |
60 |
tgaaaacgacttttcgatttcctttttgtggcattcgctttctttagctgaaaagta---atttgaagaacaaagccacagatagatagaaagatagata |
156 |
Q |
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| T |
40821445 |
tgaaaacgacttttcgatttcctttttgtggcattcgctttctttagctgaaaagtactaatttgaagaacaaagccacagatagataga----tagata |
40821540 |
T |
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| Q |
157 |
gataggattgaaaactaaaacaacttttgaattaatttatcgcacttcatttccaattactataatggtggctcttgttgtcattgcagtgcagacaagt |
256 |
Q |
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| T |
40821541 |
gataggattgaaaactaaaacaacttttgaattaatttatcgcacttcatttccaattactataatggtggctcttgttgtcattgcagtgcagacaagt |
40821640 |
T |
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| Q |
257 |
gcttgcctttgctcttgtattgttattatctgttaaaataaataaattaattaattaatctcggtggtggaagtggatgtcatgaacataaaatgtagaa |
356 |
Q |
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| T |
40821641 |
gcttgcctttgctcttg---tgttgttatctattaaaataaatgaattaattaattaatctcggtggtggaagtggatgtcatgaacataaaatgtagaa |
40821737 |
T |
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| Q |
357 |
tattctttttagttctattttattgtatacacagcataatttagtcattatcccttttcggaacaaggtgggtgttaggtaaacataatatgcattatgt |
456 |
Q |
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| T |
40821738 |
tattctttttagttctattttattgtatacacagcataa-ttagtcattatcctttttcggaacaaggtgggtgttaggtaaacataatatgcattatgt |
40821836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 274
Target Start/End: Original strand, 40814175 - 40814205
Alignment:
| Q |
244 |
agtgcagacaagtgcttgcctttgctcttgt |
274 |
Q |
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| T |
40814175 |
agtgcagacaagtgcttgcctttgctcttgt |
40814205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 176
Target Start/End: Original strand, 40814071 - 40814099
Alignment:
| Q |
148 |
agatagatagataggattgaaaactaaaa |
176 |
Q |
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| T |
40814071 |
agatagatagataggattgaaaactaaaa |
40814099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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