View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19774_low_7 (Length: 476)
Name: NF19774_low_7
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Original strand, 40728714 - 40729157
Alignment:
| Q |
18 |
ctcctcctcgtggcgactcaacttcttcttcttaagctcattcttaatcaactcaacttgctccgaaaaatcagtttgatcgtcaaaatccttaggcttc |
117 |
Q |
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| T |
40728714 |
ctcctcctcgtggcgactcaacttcttcttcttaagctcattcttaatcaactcaacttgctccgaaaaatcagtttgatcatcaaaatccttaggcttc |
40728813 |
T |
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| Q |
118 |
attctcctcaccctcttcacatcatatttccccaaagcagcaatactacccaccttagaatagtatccctcattctttgattccacttcactctcactct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
40728814 |
attctcctcaccctcttcacatcatatttccccaaagcagcaatactacccaccttagaatagtacccctcattctttgattccacttcactctcactat |
40728913 |
T |
|
| Q |
218 |
cactatcactcgaagaatcattctttctccaaatttttcgccgttcaggcttttccgtcccaaccctattctgatcactcaaatccctaaccctaggaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40728914 |
cactatcactcgaagaatcattctttctccaaatttttcgccgttcaggcttttccgtcccaaccctattctgatcactcaaatccctaaccctaggaac |
40729013 |
T |
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| Q |
318 |
ggaacgaatagaatccctaacctcaggaacagaacggtaccccctaatttgtgaatagttattcaaattccgactgcgtaaatcaatttgcggcgatgct |
417 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40729014 |
ggaacgaatagaatccttaacctcaggaacagaacggtagcccctaatttgtgaatagttattcaaattccgactgcgtaaatcaatttgcggcgatgct |
40729113 |
T |
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| Q |
418 |
tgggattgaatctgggcctgggcttgggtttgggtctggtaggt |
461 |
Q |
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| T |
40729114 |
tgggattgaatctgggcctgggcttgggtttgggtctggtaggt |
40729157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 50841894 - 50842002
Alignment:
| Q |
215 |
tctcactatcactcgaagaatcattctttctccaaatttttcgccgttcaggcttttccgtcccaaccctattctgatcactcaaatccctaaccctagg |
314 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||| || ||||||||||| | ||||||||| |||| ||||||||||||||||| |||||| |
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| T |
50841894 |
tctcactatcactagaagaatcattcttcctccaaatttttctcctttcaggcttttttgccccaaccctcttcttatcactcaaatccctaa-cctagg |
50841992 |
T |
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| Q |
315 |
aacggaacga |
324 |
Q |
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| T |
50841993 |
aacagaacga |
50842002 |
T |
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