View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19774_low_8 (Length: 471)
Name: NF19774_low_8
Description: NF19774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19774_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 14 - 453
Target Start/End: Original strand, 1257560 - 1258000
Alignment:
| Q |
14 |
agatgagtaaaactagacaatgaggcattaaacccacactctatttgtagcccctctaatggcaaagggtcgtgattaaggaagcacatattgtggaaag |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1257560 |
agatgagtaaaactagacaatgaggcattaaacccacactctatttgtagcccctctaatggcaaagggtcgtgattaaggaagcacgtattgtggaaag |
1257659 |
T |
|
| Q |
114 |
gttgtccactatgaaccttgtcaacggatcatgtcataaagttgaagctgacagtcgaatatgggatggcacaaacacctcaacaaggaaaaaccaacac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1257660 |
gttgtccactatgaaccttgtcaacggatcatgtcataaagttgaagctgacagtcgaatctgggatggcacaaacacctcaacaaggaaaaaccaacac |
1257759 |
T |
|
| Q |
214 |
acatcttgcagaaaaagccgagagaggctatagactattggccatgtcgtttaggccaacatgaaattttgcctataaatacctatcataatgtattgaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1257760 |
acatcttgcagaaaaagccgagagaggctatagactattggccatgtcgtttaggccaacatgaaattttgcctataaatacctatcataatgtattgaa |
1257859 |
T |
|
| Q |
314 |
gacacgaatcatgatcaatcaaacacaagttatttttgctatttttatgtccatcattatgtcttcaccattattttacatgcc-ttttttagtctggta |
412 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1257860 |
gacacaaatcatgatcaatcaaacacaagttatttttgctatttttatgtccatcattatgtcttcaccattattttacatgcctttttttagtctggta |
1257959 |
T |
|
| Q |
413 |
gcgaaaacccaaaaaagaattgtatttaacactccactgga |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1257960 |
gcgaaaacccaaaaaagaattgtatttaacactccactgga |
1258000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University