View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19775_high_2 (Length: 382)
Name: NF19775_high_2
Description: NF19775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19775_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 11437703 - 11438069
Alignment:
| Q |
1 |
tgaatctgaatttgaattagaatttgatgaatcatattcatatggttctatattcaatgattcaacaaataatggcattaagtaaccattggaaaagagt |
100 |
Q |
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| T |
11437703 |
tgaatctgaatttgaattagaatttgatgaatcatattcatatggttctatattcaatgattcaacaaataatggcattaagtaaccattggaaaagagt |
11437802 |
T |
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| Q |
101 |
tgatctgcatcaacaagagtagtgagaggggattcttgtaaggttggaaaatcaaatttgaaatcttgtgagtttataaagaatcttcttgaagatggca |
200 |
Q |
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| T |
11437803 |
tgatctgcatcaacaagagtggtgagaggggattcttgtaaggttggaaaatcaaatttgaaatcttgtgagtttataaagaatcttcttgaagatggca |
11437902 |
T |
|
| Q |
201 |
ttcttggatccatttcaatgaaggaagaagcttcatcagaagcatcaagataagttctaaaggaagaaccatcaaggctttctactagtgatgatggttt |
300 |
Q |
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| T |
11437903 |
ttcttggatccatttcaatgaaggaagaagcttcatcagaagcatcaagataagttctaaaggaagaaccatcaaggctttctactagtgatgatggttt |
11438002 |
T |
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| Q |
301 |
aaggtttactaaccaactatatgaaaaactttctattgagagaggatgagatgtttccatggtttct |
367 |
Q |
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| T |
11438003 |
aaggtttactaaccaactatatgaaaaactttctattgagagaggatgagatgtttccatggtttct |
11438069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 12 - 362
Target Start/End: Original strand, 11423198 - 11423539
Alignment:
| Q |
12 |
ttgaattagaatttgatgaatcatattcatatggttctatattcaatgattcaacaaataatggcattaagtaaccattggaaaagagttgatctgcatc |
111 |
Q |
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| T |
11423198 |
ttgaatttgaatctgatgaatcatattcatatggttcagttttcaatgattaaacaaaatatggcataaagtaaccattggaaaagagttggtctgcatc |
11423297 |
T |
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| Q |
112 |
aacaagagtagtgagaggggattcttgtaaggttggaaaatcaaatttgaaatcttgtgagtttataaagaatcttcttgaagatggcattcttggatcc |
211 |
Q |
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| T |
11423298 |
aacaagatt---gagagaagaat---gtgaggttggaaaatgaaatttaaaatcttgtgagtttataaagaatcttttagaaggtggcatttttggattc |
11423391 |
T |
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| Q |
212 |
atttcaatgaaggaagaagcttcatcagaagcatcaagataagttctaaaggaagaaccatcaaggctttctactagtgatgatggtttaaggtttacta |
311 |
Q |
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| T |
11423392 |
atttcaatgaaagaagaagcttcatcataagcatcaagagaagttctaaaggagt---catcaaggctttctacaagtgaatttggtttagggtttacta |
11423488 |
T |
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| Q |
312 |
accaactatatgaaaaactttctattgagagaggatgagatgtttccatgg |
362 |
Q |
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| T |
11423489 |
accaactattagaaaaactttcaattgaaataggatgagatgtttccatgg |
11423539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 11430356 - 11430593
Alignment:
| Q |
1 |
tgaatctgaatttgaattagaatttgatgaatcatattcatatggttctatattcaatgattcaacaaataatggcattaagtaaccattggaaaagagt |
100 |
Q |
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| T |
11430356 |
tgaatttgaatttgaatttgaattaaatgaatcatattcatatggttcaatattcaatgattcaacaaaaaggggtattaagtaaccatttgaaaagagt |
11430455 |
T |
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| Q |
101 |
tgatctgcatcaacaagagtagtgagaggggattcttgtaaggttggaaaatcaaatttgaaatcttgtgagtttataaagaatcttcttgaagatggca |
200 |
Q |
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| T |
11430456 |
tgatctgcatcaacaagagttgtgaggggggaatgttgtgaagttggaaaatcaaattttaaatcttgtgagtttatgaaaaatcttctagaaggtggca |
11430555 |
T |
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| Q |
201 |
ttcttggatccatttcaatgaaggaagaagcttcatca |
238 |
Q |
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| T |
11430556 |
ttcttggatccatttcaatgaaggaagaaccttcatca |
11430593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 270 - 362
Target Start/End: Original strand, 11430598 - 11430690
Alignment:
| Q |
270 |
catcaaggctttctactagtgatgatggtttaaggtttactaaccaactatatgaaaaactttctattgagagaggatgagatgtttccatgg |
362 |
Q |
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| T |
11430598 |
catcaaggctttcttctagtgaagatggttcaaggtttactaaccaactatatgaaaaactttcaactaaaagtggatgagatgtttccatgg |
11430690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 44907410 - 44907239
Alignment:
| Q |
53 |
ttcaatgattcaacaaataatggcattaagtaaccattggaaaagagttgatctgcatcaacaagagtagtgagaggggattcttgtaaggttggaaaat |
152 |
Q |
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| T |
44907410 |
ttcaaagattcaacaacaaaaggcataaggtaaccatcagaaaagagttcatctgcatgaacaagagta---agaggggatt---gtgaggttggaaaat |
44907317 |
T |
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| Q |
153 |
caaatttga---aatcttgtgagtttataaagaatcttcttgaagatggcattcttggatccatttcaatgaaggaag |
227 |
Q |
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| T |
44907316 |
caaatttgttggaatcatgtgaattcatgaagaatcttttagaaggtggcattcttggatccatctcaatgaaggaag |
44907239 |
T |
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