View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19775_high_4 (Length: 311)

Name: NF19775_high_4
Description: NF19775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19775_high_4
NF19775_high_4
[»] chr6 (12 HSPs)
chr6 (16-296)||(34898527-34898806)
chr6 (21-132)||(1485125-1485235)
chr6 (21-92)||(34620921-34620992)
chr6 (21-92)||(34748358-34748429)
chr6 (21-92)||(31305826-31305897)
chr6 (22-92)||(34027397-34027467)
chr6 (48-92)||(2234550-2234595)
chr6 (54-132)||(30926790-30926868)
chr6 (21-85)||(882728-882792)
chr6 (21-92)||(4910943-4911014)
chr6 (36-92)||(852567-852623)
chr6 (32-92)||(17225887-17225947)
[»] scaffold0361 (1 HSPs)
scaffold0361 (21-92)||(14093-14164)
[»] chr7 (6 HSPs)
chr7 (35-132)||(38123659-38123755)
chr7 (21-132)||(27571858-27571968)
chr7 (21-90)||(40561737-40561806)
chr7 (22-88)||(40795969-40796035)
chr7 (21-92)||(22310438-22310509)
chr7 (21-90)||(41788353-41788422)
[»] chr3 (11 HSPs)
chr3 (46-92)||(46853538-46853584)
chr3 (46-123)||(30301002-30301079)
chr3 (24-132)||(40147832-40147939)
chr3 (46-132)||(35058357-35058443)
chr3 (23-92)||(35264392-35264461)
chr3 (21-125)||(27266773-27266876)
chr3 (26-92)||(31708223-31708289)
chr3 (36-88)||(36302222-36302274)
chr3 (33-92)||(37335025-37335084)
chr3 (21-91)||(35253446-35253516)
chr3 (21-82)||(29475364-29475425)
[»] chr1 (19 HSPs)
chr1 (21-126)||(48548993-48549095)
chr1 (20-82)||(1233350-1233412)
chr1 (46-88)||(28287340-28287382)
chr1 (27-92)||(213522-213587)
chr1 (20-85)||(1514385-1514450)
chr1 (46-132)||(8381962-8382047)
chr1 (46-90)||(20026168-20026212)
chr1 (46-90)||(24587949-24587993)
chr1 (20-84)||(52263625-52263689)
chr1 (21-92)||(4458421-4458492)
chr1 (21-92)||(34915101-34915172)
chr1 (46-92)||(7790646-7790692)
chr1 (47-92)||(47892393-47892438)
chr1 (24-92)||(3016197-3016265)
chr1 (32-92)||(10324928-10324988)
chr1 (52-92)||(17284131-17284171)
chr1 (21-92)||(30557539-30557608)
chr1 (36-88)||(30850393-30850445)
chr1 (33-89)||(52339719-52339775)
[»] chr4 (11 HSPs)
chr4 (21-92)||(55927749-55927820)
chr4 (46-92)||(4243422-4243468)
chr4 (21-75)||(33843763-33843817)
chr4 (52-92)||(33844012-33844052)
chr4 (21-92)||(8604601-8604672)
chr4 (46-92)||(2207114-2207160)
chr4 (26-92)||(32818354-32818420)
chr4 (22-67)||(25319108-25319153)
chr4 (46-83)||(32100336-32100373)
chr4 (32-92)||(10185229-10185289)
chr4 (32-91)||(16551993-16552050)
[»] chr2 (9 HSPs)
chr2 (21-92)||(44439289-44439360)
chr2 (21-67)||(15220840-15220886)
chr2 (23-92)||(1976845-1976916)
chr2 (21-92)||(16013683-16013760)
chr2 (20-90)||(37420171-37420243)
chr2 (32-126)||(42982546-42982639)
chr2 (46-92)||(42741012-42741058)
chr2 (20-65)||(40401621-40401666)
chr2 (21-65)||(4908852-4908896)
[»] chr5 (6 HSPs)
chr5 (21-89)||(8591519-8591587)
chr5 (22-92)||(36639972-36640042)
chr5 (45-82)||(7925431-7925468)
chr5 (47-91)||(9185020-9185064)
chr5 (21-73)||(35139002-35139054)
chr5 (23-67)||(37886019-37886063)
[»] chr8 (4 HSPs)
chr8 (21-88)||(32927931-32927998)
chr8 (21-92)||(35495295-35495366)
chr8 (46-92)||(13384658-13384704)
chr8 (21-92)||(32767422-32767495)


Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 34898806 - 34898527
Alignment:
Q  16 atacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagctt 115  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| ||||||||||||    
T  34898806 atacaatttatgtt-cgatacatttgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaataaaaaaactctaatttctagctt 34898708  T
Q  116 caagtagaatcgattctcaccacttatttgctaacttactgtttcttcgtctaggtgatctctggtcaggttccgaagggggtgttattaagatttggcc 215  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34898707 caagtagaatcgattctcaccacttatttgctaatttactgtttcttcgtctaggtgatctctggtcaggttccgaagggggtgttattaagatttggcc 34898608  T
Q  216 ttgggaatcaattgaaaaatctctctctatgtctccagaagaaaagcacatggcagccttacttgtggagagatcattcat 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34898607 ttgggaatcaattgaaaaatctctctctatgtctccagaagaaaagcacatggcagccttacttgtggagagatcattcat 34898527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 1485125 - 1485235
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagt 120  Q
    ||||| |||| |||||| |  ||| |||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||| |||||||    
T  1485125 atttacgtttggatacacttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaat-caaaagctccaatttctagattcaagt 1485223  T
Q  121 agaatcgattct 132  Q
    |||||| |||||    
T  1485224 agaatcaattct 1485235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 34620992 - 34620921
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||||| ||||||||  ||| ||||||||||||| ||||||||  ||||| |||||||||||||||||    
T  34620992 atttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaat 34620921  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 34748429 - 34748358
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||||| ||||||||  ||| ||||||||||||| ||||||||  ||||| |||||||||||||||||    
T  34748429 atttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaat 34748358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 31305826 - 31305897
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||||| |||| |||  ||| |||||||||||| ||||||||| ||||||  ||||||||||||||||    
T  31305826 atttatgtttggatatattaatgtaaaagtgagttgatcaataaatttgagtgtataaatcaattctagaat 31305897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 34027397 - 34027467
Alignment:
Q  22 tttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||| || |||| |||| ||| | ||||||||||| |||||||| |||||| |||||||||||||||||    
T  34027397 tttatggttagatatattcatgtaagagtgagttgaataataaatttgagtgtaaaaatcaattctagaat 34027467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 2234595 - 2234550
Alignment:
Q  48 agtgagttgaacaa-taaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||    
T  2234595 agtgagttgaacaaataaatttgagtgttaaaatcaattctagaat 2234550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 30926790 - 30926868
Alignment:
Q  54 ttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaag-tagaatcgattct 132  Q
    |||||||||||||| |||||| |||||||||||||||||       |||||||||||||||||||| ||||||| |||||    
T  30926790 ttgaacaataaatttgagtgtaaaaatcaattctagaat-aaaaaactccaatttctagcttcaagttagaatccattct 30926868  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 882792 - 882728
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaatt 85  Q
    |||||||||| ||||||||| ||  |||||||||| ||||||||||| || ||| ||||||||||    
T  882792 atttatgtttggatacattcatgcaaaagtgagttaaacaataaatttgaatgtaaaaatcaatt 882728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 4911014 - 4910943
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||||| ||||||||  ||| ||||||||| |||| ||||||| |  ||| |||||||||||||||||    
T  4911014 atttatgtttggatacatttatgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaattctagaat 4910943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 852623 - 852567
Alignment:
Q  36 cattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    ||||| ||| |||||||||| ||||||| ||| | |||| |||||||||||||||||    
T  852623 cattcatgtaaaagtgagttaaacaatacatttgggtgtaaaaatcaattctagaat 852567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 17225947 - 17225887
Alignment:
Q  32 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    ||||||||| ||| ||| |||||||||| ||||||| |  ||| |||||||||||||||||    
T  17225947 gatacattcatgtaaaactgagttgaactataaatttgtatgtaaaaatcaattctagaat 17225887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 14093 - 14164
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||||| ||||||||| ||| ||||||||||||| |||||||| |||||| |||||||||||||||||    
T  14093 atttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgagtgtaaaaatcaattctagaat 14164  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 38123659 - 38123755
Alignment:
Q  35 acattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatcgattct 132  Q
    |||||| ||| |||||||||||| ||||||||| |||||| |||||||||||||||||       || |||||||||||||||||||||||| |||||    
T  38123659 acattcatgtaaaagtgagttgaccaataaatttgagtgtaaaaatcaattctagaat-tagaagctacaatttctagcttcaagtagaatcaattct 38123755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 27571968 - 27571858
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagt 120  Q
    ||||||| || ||||||||  ||| || |||||||||| |||||| | ||||||||||||||||||||||||       |||||||||||| ||||||||    
T  27571968 atttatggttggatacatttatgtaaatgtgagttgaataataaacttgagtgttaaaatcaattctagaat-caaaagctccaatttctaacttcaagt 27571870  T
Q  121 agaatcgattct 132  Q
    |||||| |||||    
T  27571869 agaatcaattct 27571858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 40561737 - 40561806
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 90  Q
    |||||||||| ||||||||| ||| |||||||||||||||||| ||| ||||||  |||| |||||||||    
T  40561737 atttatgtttggatacattcatgtaaaagtgagttgaacaatatatttgagtgtataaattaattctaga 40561806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 40795969 - 40796035
Alignment:
Q  22 tttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattcta 88  Q
    |||||| || ||||||||| ||| ||||||| ||||| | |||||| ||||||||||||||||||||    
T  40795969 tttatgattggatacattcatgtaaaagtgatttgaatagtaaatttgagtgttaaaatcaattcta 40796035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 22310438 - 22310509
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||||| |||||||||  || ||||||| ||||| ||||||||  ||||| ||||| |||||||||||    
T  22310438 atttatgtttggatacattctcgtaaaagtgaattgaaaaataaatttaagtgtaaaaattaattctagaat 22310509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 41788422 - 41788353
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 90  Q
    ||||||||||  |||||||  | | |||||||||||||||  ||||| ||||||||||||||||| ||||    
T  41788422 atttatgtttgtatacattaatataaaagtgagttgaacagcaaatttgagtgttaaaatcaattataga 41788353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 46853538 - 46853584
Alignment:
Q  46 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  46853538 aaagtgagttgaacaataaatttgagtgttaaaatcaattctagaat 46853584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 30301002 - 30301079
Alignment:
Q  46 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtaga 123  Q
    |||||| ||||||||||||||| ||||||||||| ||||||||||||       ||||||||||||||||||| ||||    
T  30301002 aaagtgggttgaacaataaatttgagtgttaaaaccaattctagaattaaaaaactccaatttctagcttcaaataga 30301079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 40147832 - 40147939
Alignment:
Q  24 tatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtaga 123  Q
    ||||||| ||||||||  ||| |||||||||||||  |||||||| |||||| ||||||||||||||||       |||||| ||||||||| |||||||    
T  40147832 tatgtttggatacattaatgtaaaagtgagttgaatgataaattcaagtgttgaaatcaattctagaat-caaaagctccaaattctagcttgaagtaga 40147930  T
Q  124 atcgattct 132  Q
    ||| |||||    
T  40147931 atcaattct 40147939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 35058443 - 35058357
Alignment:
Q  46 aaagtgagttgaacaataa-attcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatcgattct 132  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||       ||| ||||||||||| ||||||||||| |||||    
T  35058443 aaagtgagttgaacaataatatttgagtgttaaaatcaattctagaat-caaaagctcgaatttctagctccaagtagaatcaattct 35058357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 35264392 - 35264461
Alignment:
Q  23 ttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||| | ||||||| ||| ||| ||| ||||||||||||||  |||||||||||||||||||||||    
T  35264392 ttatgtttgggtacattcatgtaaaaatgacttgaacaataaatttaagtgttaaaatcaattctagaat 35264461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 27266773 - 27266876
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagt 120  Q
    |||||||||| ||||  ||| ||| ||||| |||||||||||||||| |||||| ||||| |||||| ||||       || ||||||||||||||||||    
T  27266773 atttatgtttagatattttcatgtaaaagttagttgaacaataaatttgagtgtaaaaattaattcttgaat-cattagctacaatttctagcttcaagt 27266871  T
Q  121 agaat 125  Q
    |||||    
T  27266872 agaat 27266876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 31708223 - 31708289
Alignment:
Q  26 tgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    ||||| ||||||||| ||| |||||||||||||  ||||||| | |||||| |||||||||||||||    
T  31708223 tgtttggatacattcatgtaaaagtgagttgaattataaatttgtgtgttagaatcaattctagaat 31708289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 36302274 - 36302222
Alignment:
Q  36 cattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattcta 88  Q
    ||||| ||| ||||||||||||||||||||||  |||| ||||||||||||||    
T  36302274 cattcatgtaaaagtgagttgaacaataaatttaagtgctaaaatcaattcta 36302222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 37335025 - 37335084
Alignment:
Q  33 atacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||| | | ||| ||||||||||||| ||||| ||||| |||||||||||||||||    
T  37335025 atacattcatataaaaatgagttgaacaatgaattcaagtgtaaaaatcaattctagaat 37335084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 35253446 - 35253516
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaa 91  Q
    |||||| ||| || ||| || ||| |||||||||||||  ||||||| |||||| ||||||||||||||||    
T  35253446 atttatatttggaaacaatcatgtaaaagtgagttgaatgataaatttgagtgtaaaaatcaattctagaa 35253516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 29475364 - 29475425
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatca 82  Q
    |||||||||| ||||| ||  ||| ||| |||||||||||| ||||| ||||||||||||||    
T  29475364 atttatgttttgatacgtttatgtcaaactgagttgaacaaaaaatttgagtgttaaaatca 29475425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 48548993 - 48549095
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagt 120  Q
    |||||||||| ||||||||  ||| |||||||||||||||||||||  |||| | |||||||||||||||||       || ||||||||||||||||||    
T  48548993 atttatgttttgatacatttatgtaaaagtgagttgaacaataaat--gagtttaaaaatcaattctagaat-cagaagctacaatttctagcttcaagt 48549089  T
Q  121 agaatc 126  Q
    ||||||    
T  48549090 agaatc 48549095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 1233412 - 1233350
Alignment:
Q  20 aatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatca 82  Q
    ||||||||||| ||||||||| ||| |||||||||| ||||||||||| |||||| |||||||    
T  1233412 aatttatgtttagatacattcatgtgaaagtgagttcaacaataaatttgagtgtaaaaatca 1233350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 28287340 - 28287382
Alignment:
Q  46 aaagtgagttgaacaataaattcgagtgttaaaatcaattcta 88  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  28287340 aaagttagttgaacaataaatttgagtgttaaaatcaattcta 28287382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 213522 - 213587
Alignment:
Q  27 gtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||| ||| ||||| ||| |||||||||||||||| ||||| |||| | |||||||||||||||||    
T  213522 gtttggatgcattcatgtaaaagtgagttgaacaacaaatttgagtttaaaaatcaattctagaat 213587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 1514450 - 1514385
Alignment:
Q  20 aatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaatt 85  Q
    ||||| ||||| ||||||||| ||| ||| |||||||||||||||||| | |||| ||||||||||    
T  1514450 aatttgtgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaatt 1514385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 8382047 - 8381962
Alignment:
Q  46 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatcgattct 132  Q
    |||||||||||||||||||| | || ||| ||||||||||||||||        || |||||||||||||||||||||||| |||||    
T  8382047 aaagtgagttgaacaataaacttgaatgtaaaaatcaattctagaa-ctagaggctacaatttctagcttcaagtagaatcaattct 8381962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 20026168 - 20026212
Alignment:
Q  46 aaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 90  Q
    ||||||| |||||||||||||| ||||||| ||||||||||||||    
T  20026168 aaagtgaattgaacaataaatttgagtgttcaaatcaattctaga 20026212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 24587993 - 24587949
Alignment:
Q  46 aaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 90  Q
    ||||||||||||| |||||||| ||||||||||||||||| ||||    
T  24587993 aaagtgagttgaataataaatttgagtgttaaaatcaattataga 24587949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 52263625 - 52263689
Alignment:
Q  20 aatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaat 84  Q
    ||||||||||| ||||||||  ||| ||| |||||| ||||||||||| |||||| |||||||||    
T  52263625 aatttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 52263689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 4458492 - 4458421
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||| ||| |||||||||  || ||||||| ||| ||||||||||| |||||||||  ||||||||||||    
T  4458492 atttatatttggatacattcaggtaaaagtgaattgtacaataaattcaagtgttaaatccaattctagaat 4458421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 34915172 - 34915101
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    ||||||||||  |||||||| ||| |||||||||||||  ||||| | | |||||| |||||||||||||||    
T  34915172 atttatgtttgaatacattcatgtaaaagtgagttgaattataaaatggtgtgttagaatcaattctagaat 34915101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 7790646 - 7790692
Alignment:
Q  46 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||||||||||||||||| | |||| |||||||||| ||||||    
T  7790646 aaagtgagttgaacaataaatttgtgtgtaaaaatcaattatagaat 7790692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 47892393 - 47892438
Alignment:
Q  47 aagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||||||||||||  ||  |||||||||||||||||||||||    
T  47892393 aagtgagttgaacaatatgttttagtgttaaaatcaattctagaat 47892438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 3016265 - 3016197
Alignment:
Q  24 tatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    ||||||| ||||||||| ||| ||||||||||||||  ||||||   |||| || ||||||||||||||    
T  3016265 tatgtttggatacattcatgtaaaagtgagttgaaccgtaaatttatgtgtaaacatcaattctagaat 3016197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 10324928 - 10324988
Alignment:
Q  32 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    ||||||||  ||| |||||||||  ||||||||||| |||||| |||||||||| ||||||    
T  10324928 gatacattaatgtaaaagtgagtataacaataaatttgagtgtaaaaatcaattatagaat 10324988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 17284171 - 17284131
Alignment:
Q  52 agttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||||||||||| |||||| |||||||||| ||||||    
T  17284171 agttgaacaataaatttgagtgtaaaaatcaattttagaat 17284131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 30557608 - 30557539
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||| ||||| ||||||||| | | |||||||||||||| |||||||   |||| |||||||||||||||||    
T  30557608 atttgtgtttggatacattcatataaaagtgagttgaactataaatt--tgtgtgaaaatcaattctagaat 30557539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 30850393 - 30850445
Alignment:
Q  36 cattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattcta 88  Q
    ||||| ||| |||||||||||||| ||||||| |  |||||||||||||||||    
T  30850393 cattcatgtaaaagtgagttgaactataaatttgtatgttaaaatcaattcta 30850445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 52339719 - 52339775
Alignment:
Q  33 atacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctag 89  Q
    |||||||||||| || |||| |||||||||||||| |||| | ||| ||||||||||    
T  52339719 atacattcgtgtaaatgtgacttgaacaataaatttgagtataaaactcaattctag 52339775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 55927749 - 55927820
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||||| ||||||||| ||| ||||||| |||||||||||||| |||||| |  ||||||||||||||    
T  55927749 atttatgtttggatacattcatgtaaaagtgacttgaacaataaatttgagtgtgacgatcaattctagaat 55927820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 4243468 - 4243422
Alignment:
Q  46 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    ||||||||| |||||||||||| |||||| |||||||||||||||||    
T  4243468 aaagtgagtagaacaataaatttgagtgtaaaaatcaattctagaat 4243422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 33843817 - 33843763
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgtt 75  Q
    |||||||||| |||| |||| ||| | ||||||||||||||||||||||||||||    
T  33843817 atttatgtttggatatattcatgtaatagtgagttgaacaataaattcgagtgtt 33843763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 33844052 - 33844012
Alignment:
Q  52 agttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  33844052 agttgaacaataaatttgagtgttaaaatcaattttagaat 33844012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 8604601 - 8604672
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||||| ||||||||| ||| ||||||  || ||| ||||||| | |||| |||||||||||||||||    
T  8604601 atttatgtttggatacattcatgtaaaagtgcattcaactataaatttgtgtgtgaaaatcaattctagaat 8604672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 2207160 - 2207114
Alignment:
Q  46 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||||||||| ||||||| ||||||| ||||||||| ||||||    
T  2207160 aaagtgagttgaaccataaattggagtgttgaaatcaattatagaat 2207114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 32818354 - 32818420
Alignment:
Q  26 tgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    ||||| ||||||||| ||| ||||| |||||||| ||||||| | |||  |||||||||||||||||    
T  32818354 tgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaat 32818420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 25319153 - 25319108
Alignment:
Q  22 tttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 67  Q
    ||||||||||||||||||   || ||||||||||||||||||||||    
T  25319153 tttatgtttcgatacatttacgtaaaagtgagttgaacaataaatt 25319108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 32100373 - 32100336
Alignment:
Q  46 aaagtgagttgaacaataaattcgagtgttaaaatcaa 83  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  32100373 aaagtgagttgaacaataaatttgagtgtaaaaatcaa 32100336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 10185289 - 10185229
Alignment:
Q  32 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    ||||||||  ||| |||||||||| ||||||||||| |||||| || ||||||| ||||||    
T  10185289 gatacattaatgtaaaagtgagttaaacaataaatttgagtgtaaagatcaattttagaat 10185229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 16552050 - 16551993
Alignment:
Q  32 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaa 91  Q
    ||||||||| ||| |||||||||||||| |||||||   |||| ||||||||||||||||    
T  16552050 gatacattcatgtaaaagtgagttgaactataaatt--tgtgtgaaaatcaattctagaa 16551993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 44439360 - 44439289
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||||| ||||  ||  ||| |||||||||||||||||||||| ||||||||||||||||| ||||||    
T  44439360 atttatgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaat 44439289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 15220840 - 15220886
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 67  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||    
T  15220840 atttatgtttggatacattcatgttaaagtgagttgaacaataaatt 15220886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 1976845 - 1976916
Alignment:
Q  23 ttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgt--taaaatcaattctagaat 92  Q
    |||||||| ||||||||| ||| |||||||||| ||||||||||| ||||||   |||||||||||||||||    
T  1976845 ttatgtttggatacattcatgtaaaagtgagttcaacaataaatttgagtgtaaaaaaatcaattctagaat 1976916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 16013683 - 16013760
Alignment:
Q  21 atttatgtttcgatacattcgtgt------taaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||||| |||||||||||||      ||||||||||||| ||||||||| |||||| ||||||| |||||||||    
T  16013683 atttatgtttggatacattcgtgtaaactgtaaagtgagttgaccaataaatttgagtgtaaaaatcatttctagaat 16013760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 37420171 - 37420243
Alignment:
Q  20 aatttatgtttcgatacattcgt--gttaaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 90  Q
    |||||||||||| ||| || |||  || ||||||||||||| |||||||| |||||| |||||||||||||||    
T  37420171 aatttatgtttcaatatatacgtaagtaaaagtgagttgaataataaatttgagtgtaaaaatcaattctaga 37420243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 42982639 - 42982546
Alignment:
Q  32 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatc 126  Q
    ||||||||| ||| ||||||||||| | |||||||| | |||| |||||||||||| ||||       || ||||||||||||||||||||||||    
T  42982639 gatacattcatgtaaaagtgagttgtaaaataaatttgtgtgtaaaaatcaattctggaat-caaaagctacaatttctagcttcaagtagaatc 42982546  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 42741058 - 42741012
Alignment:
Q  46 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    ||||||||||| ||| |||||| |||||| |||||||||||||||||    
T  42741058 aaagtgagttggacagtaaatttgagtgtaaaaatcaattctagaat 42741012  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 40401621 - 40401666
Alignment:
Q  20 aatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 65  Q
    ||||||||||| ||||||||| ||| ||||| ||||||||||||||    
T  40401621 aatttatgtttggatacattcatgtaaaagtcagttgaacaataaa 40401666  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 4908896 - 4908852
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 65  Q
    |||||||||| ||||||||| ||||||||||  ||||||||||||    
T  4908896 atttatgtttggatacattcatgttaaagtggattgaacaataaa 4908852  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 8591587 - 8591519
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctag 89  Q
    |||||| ||| ||||||||| | | |||||||||||||||| ||||| |||||  ||||||||||||||    
T  8591587 atttatatttggatacattcctataaaagtgagttgaacaacaaatttgagtgaaaaaatcaattctag 8591519  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 36640042 - 36639972
Alignment:
Q  22 tttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    ||||||||| ||||  ||| ||| |||||||| |||||| |||||| |||||| |||| ||||||||||||    
T  36640042 tttatgttttgataggttcatgtaaaagtgaggtgaacattaaatttgagtgtaaaaaacaattctagaat 36639972  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 7925468 - 7925431
Alignment:
Q  45 taaagtgagttgaacaataaattcgagtgttaaaatca 82  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  7925468 taaagtgagttgaacaataaatttgagtgtaaaaatca 7925431  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 9185020 - 9185064
Alignment:
Q  47 aagtgagttgaacaataaattcgagtgttaaaatcaattctagaa 91  Q
    ||||||||||||| |||||||  | ||||||||||||||||||||    
T  9185020 aagtgagttgaacgataaatttaaatgttaaaatcaattctagaa 9185064  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 35139002 - 35139054
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtg 73  Q
    |||||||||  ||||||||| | | |||||||||||||||||||||| |||||    
T  35139002 atttatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 35139054  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 37886019 - 37886063
Alignment:
Q  23 ttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 67  Q
    ||||||||  ||||||| |||| ||||||||||||||||||||||    
T  37886019 ttatgtttgaatacatttgtgtaaaagtgagttgaacaataaatt 37886063  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 32927998 - 32927931
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattcta 88  Q
    |||| ||||| ||||||||| ||| |||||||||||||| ||||||| | |||| ||||| |||||||    
T  32927998 atttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattcta 32927931  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 35495366 - 35495295
Alignment:
Q  21 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||||| |||||||||   | ||||||| |||||||||||||| |||| | |||||||||| ||||||    
T  35495366 atttatgtttggatacattcaaataaaagtgatttgaacaataaatttgagtataaaaatcaattatagaat 35495295  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 13384658 - 13384704
Alignment:
Q  46 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||||||||| ||||||| | |||| |||||||||||||||||    
T  13384658 aaagtgagttgaactataaatttgtgtgtgaaaatcaattctagaat 13384704  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 32767495 - 32767422
Alignment:
Q  21 atttatgtttcgatacattc--gtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 92  Q
    |||||||||| |||||||||  |||| ||||||||||||||||||||||  ||||| ||| ||| |||| ||||    
T  32767495 atttatgtttggatacattcatgtgtaaaagtgagttgaacaataaatttaagtgtaaaagtcagttctcgaat 32767422  T

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