View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19775_high_6 (Length: 273)

Name: NF19775_high_6
Description: NF19775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19775_high_6
NF19775_high_6
[»] chr4 (8 HSPs)
chr4 (82-233)||(37765725-37765876)
chr4 (1-75)||(37766953-37767027)
chr4 (10-70)||(36522970-36523030)
chr4 (13-72)||(2760730-2760789)
chr4 (18-61)||(5428784-5428827)
chr4 (16-74)||(25296577-25296635)
chr4 (10-60)||(34316904-34316954)
chr4 (13-74)||(44232075-44232136)
[»] chr2 (2 HSPs)
chr2 (1-61)||(36177591-36177651)
chr2 (25-72)||(9172146-9172193)
[»] chr8 (4 HSPs)
chr8 (10-72)||(24287960-24288022)
chr8 (10-72)||(24730059-24730121)
chr8 (13-72)||(623379-623438)
chr8 (16-73)||(14237486-14237543)
[»] chr7 (5 HSPs)
chr7 (16-72)||(20885309-20885365)
chr7 (10-65)||(24423603-24423658)
chr7 (18-61)||(30342281-30342324)
chr7 (13-75)||(46103367-46103429)
chr7 (13-74)||(36623511-36623572)
[»] chr6 (4 HSPs)
chr6 (28-76)||(20226294-20226342)
chr6 (28-76)||(22120278-22120326)
chr6 (13-72)||(20437017-20437076)
chr6 (25-61)||(2360205-2360241)
[»] chr5 (4 HSPs)
chr5 (16-72)||(38916253-38916309)
chr5 (10-57)||(32401023-32401070)
chr5 (13-77)||(9502622-9502686)
chr5 (13-73)||(14634156-14634216)
[»] chr3 (5 HSPs)
chr3 (13-72)||(13499335-13499394)
chr3 (13-72)||(43181356-43181415)
chr3 (16-74)||(28690454-28690512)
chr3 (26-75)||(30174938-30174987)
chr3 (13-74)||(42761481-42761542)
[»] chr1 (1 HSPs)
chr1 (20-71)||(214366-214417)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 37765876 - 37765725
Alignment:
Q  82 taggcaaccttagtgtttggttgactctcgggtggtaaagtgtgaagtgaacttttcacacattgtcttccataaatcgatggatttatccttgaggccc 181  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  37765876 taggcaaccttagtgtttggttgactctcgggtggtaaagtgcgaagtgaactcttcacacattgtcttccataaattgatggatttatccttgaggccc 37765777  T
Q  182 gtgaaccaggtcatcatcacaatcttcaaagcaaggacaaacaacttacatt 233  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  37765776 gtgaaccaggtcatcatcgcaatcttcaaagcaaggacaaataacttacatt 37765725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 37767027 - 37766953
Alignment:
Q  1 taaaagtctaagttatgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaatggagagagtacta 75  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||  || |||||||||    
T  37767027 taaaagtctaagttatgcattgatatgttggaagtggttgattgtgacatgtattttgaaacagaaagagtacta 37766953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 36523030 - 36522970
Alignment:
Q  10 aagttatgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaatggagagag 70  Q
    |||||||||||||| ||||||||| ||||||| || |||||||| ||||||| | ||||||    
T  36523030 aagttatgcattgacatgtgtgaaatggttgactgcgacatgtactttgaaacgaagagag 36522970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 2760789 - 2760730
Alignment:
Q  13 ttatgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaatggagagagta 72  Q
    ||||||||||| || |||||||||||||| |  |||||||||||||||| |||| |||||    
T  2760789 ttatgcattgacatatgtgaagtggttgacttggacatgtattttgaaacggagggagta 2760730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 5428784 - 5428827
Alignment:
Q  18 cattgatatgtgtgaagtggttgattgtgacatgtattttgaaa 61  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||    
T  5428784 cattgacatgtgtgaagtggttgactgttacatgtattttgaaa 5428827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 25296635 - 25296577
Alignment:
Q  16 tgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaatggagagagtact 74  Q
    |||||||| ||||||||||||||||| |   ||||||||||||||| |||| |||||||    
T  25296635 tgcattgacatgtgtgaagtggttgacttatacatgtattttgaaacggagggagtact 25296577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 34316904 - 34316954
Alignment:
Q  10 aagttatgcattgatatgtgtgaagtggttgattgtgacatgtattttgaa 60  Q
    |||||||| ||||  ||||||||||||||||| || |||||||||||||||    
T  34316904 aagttatgtattggcatgtgtgaagtggttgactgcgacatgtattttgaa 34316954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 44232136 - 44232075
Alignment:
Q  13 ttatgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaatggagagagtact 74  Q
    ||||||||||  || |||||||||||||| |  |||||||||||||||| |||| |||||||    
T  44232136 ttatgcattgtcatatgtgaagtggttgacttggacatgtattttgaaacggagggagtact 44232075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 36177651 - 36177591
Alignment:
Q  1 taaaagtctaagttatgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaa 61  Q
    |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  36177651 taaaagtcaaagttgtgcattgatatgtgtgaagtggttgactgtgacatgtattttgaaa 36177591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 9172193 - 9172146
Alignment:
Q  25 atgtgtgaagtggttgattgtgacatgtattttgaaatggagagagta 72  Q
    ||||||||||||||||| |  ||||||||||||||||||||| |||||    
T  9172193 atgtgtgaagtggttgacttggacatgtattttgaaatggagtgagta 9172146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 24287960 - 24288022
Alignment:
Q  10 aagttatgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaatggagagagta 72  Q
    ||||| |||||||  ||||||||||| |||||||| |||||||||||||||| ||||||||||    
T  24287960 aagttgtgcattggcatgtgtgaagtcgttgattgcgacatgtattttgaaacggagagagta 24288022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 24730059 - 24730121
Alignment:
Q  10 aagttatgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaatggagagagta 72  Q
    |||||||||| |||||||||||||||| |||| || |||||||||||||||| | ||||||||    
T  24730059 aagttatgcaatgatatgtgtgaagtgattgactgcgacatgtattttgaaacgaagagagta 24730121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 623379 - 623438
Alignment:
Q  13 ttatgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaatggagagagta 72  Q
    ||||||||||| || |||||||||||||| |  |||||||||||||||| |||| |||||    
T  623379 ttatgcattgacatatgtgaagtggttgacttggacatgtattttgaaacggagggagta 623438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 14237486 - 14237543
Alignment:
Q  16 tgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaatggagagagtac 73  Q
    |||||||| || |||||||||||||| |  |||||||||||||||| |||| ||||||    
T  14237486 tgcattgacatatgtgaagtggttgacttggacatgtattttgaaacggagggagtac 14237543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 20885309 - 20885365
Alignment:
Q  16 tgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaatggagagagta 72  Q
    |||||||  ||||||||||||||||| |  ||||||||||||||||||||| |||||    
T  20885309 tgcattggcatgtgtgaagtggttgacttggacatgtattttgaaatggagggagta 20885365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 24423658 - 24423603
Alignment:
Q  10 aagttatgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaatgga 65  Q
    |||||||| ||||  ||||||| ||||||||| || ||||||||||||||||||||    
T  24423658 aagttatgtattggaatgtgtgcagtggttgactgcgacatgtattttgaaatgga 24423603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 30342281 - 30342324
Alignment:
Q  18 cattgatatgtgtgaagtggttgattgtgacatgtattttgaaa 61  Q
    |||||| |||||||||||||||||||  ||||||||||||||||    
T  30342281 cattgacatgtgtgaagtggttgatttggacatgtattttgaaa 30342324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 46103429 - 46103367
Alignment:
Q  13 ttatgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaatggagagagtacta 75  Q
    ||||||||||  || |||||||||||||| |  |||||||||||||||| |||| ||||||||    
T  46103429 ttatgcattggcatatgtgaagtggttgacttggacatgtattttgaaacggagggagtacta 46103367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 36623511 - 36623572
Alignment:
Q  13 ttatgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaatggagagagtact 74  Q
    ||||||||||  || |||||||||||||| |  |||||||||||||||| |||| |||||||    
T  36623511 ttatgcattggcatatgtgaagtggttgacttggacatgtattttgaaacggagggagtact 36623572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 20226342 - 20226294
Alignment:
Q  28 tgtgaagtggttgattgtgacatgtattttgaaatggagagagtactaa 76  Q
    |||||||||||||| | ||||||||||||||||| |||| |||||||||    
T  20226342 tgtgaagtggttgactttgacatgtattttgaaacggagggagtactaa 20226294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 22120326 - 22120278
Alignment:
Q  28 tgtgaagtggttgattgtgacatgtattttgaaatggagagagtactaa 76  Q
    |||||||||||||| | ||||||||||||||||| |||| |||||||||    
T  22120326 tgtgaagtggttgactttgacatgtattttgaaacggagggagtactaa 22120278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 20437076 - 20437017
Alignment:
Q  13 ttatgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaatggagagagta 72  Q
    ||||||||||| || |||||||||||||| |  |||||||||||||||| |||| |||||    
T  20437076 ttatgcattgacatatgtgaagtggttgacttggacatgtattttgaaacggagggagta 20437017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 2360205 - 2360241
Alignment:
Q  25 atgtgtgaagtggttgattgtgacatgtattttgaaa 61  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  2360205 atgtgtgtagtggttgactgtgacatgtattttgaaa 2360241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 38916309 - 38916253
Alignment:
Q  16 tgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaatggagagagta 72  Q
    |||||||  |||||||||||||||||||| ||||| |||||||||| |||| |||||    
T  38916309 tgcattggcatgtgtgaagtggttgattgcgacatatattttgaaacggagggagta 38916253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 32401023 - 32401070
Alignment:
Q  10 aagttatgcattgatatgtgtgaagtggttgattgtgacatgtatttt 57  Q
    |||||||||||||| |||| ||||||||||||||| ||||| ||||||    
T  32401023 aagttatgcattgacatgtatgaagtggttgattgcgacatatatttt 32401070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 9502686 - 9502622
Alignment:
Q  13 ttatgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaatggagagagtactaat 77  Q
    ||||||||||  || |||||||||||||| |  |||||||||||||||| |||| ||||| ||||    
T  9502686 ttatgcattggcatatgtgaagtggttgacttggacatgtattttgaaacggagggagtattaat 9502622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 14634216 - 14634156
Alignment:
Q  13 ttatgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaatggagagagtac 73  Q
    ||||||||||  || |||||||||||||| |  |||||||||||||||| |||| ||||||    
T  14634216 ttatgcattggcatatgtgaagtggttgacttggacatgtattttgaaacggagggagtac 14634156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 13499394 - 13499335
Alignment:
Q  13 ttatgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaatggagagagta 72  Q
    ||||||||||  || |||||||||||||| |  ||||||||||||||||||||| |||||    
T  13499394 ttatgcattggcatatgtgaagtggttgacttggacatgtattttgaaatggagggagta 13499335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 43181415 - 43181356
Alignment:
Q  13 ttatgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaatggagagagta 72  Q
    ||||||||||| ||||| |||||||||||||  |||||||||||||| || |||| ||||    
T  43181415 ttatgcattgacatgtgagaagtggttgatttggacatgtattttgagatagagaaagta 43181356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 28690454 - 28690512
Alignment:
Q  16 tgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaatggagagagtact 74  Q
    |||||||| || |||||||||||||| |  |||||||||||||||| |||| |||||||    
T  28690454 tgcattgacatatgtgaagtggttgacttggacatgtattttgaaaaggagggagtact 28690512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 30174938 - 30174987
Alignment:
Q  26 tgtgtgaagtggttgattgtgacatgtattttgaaatggagagagtacta 75  Q
    |||||||||| ||||||| |||||||||||||  ||||||| ||||||||    
T  30174938 tgtgtgaagtagttgattttgacatgtattttagaatggagggagtacta 30174987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 42761542 - 42761481
Alignment:
Q  13 ttatgcattgatatgtgtgaagtggttgattgtgacatgtattttgaaatggagagagtact 74  Q
    ||||||||||  || |||||||||||||| |  |||||||||||||||| |||| |||||||    
T  42761542 ttatgcattggcatatgtgaagtggttgacttggacatgtattttgaaacggagggagtact 42761481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 214417 - 214366
Alignment:
Q  20 ttgatatgtgtgaagtggttgattgtgacatgtattttgaaatggagagagt 71  Q
    |||| ||||| | |||||||||||| |||||| |||||||||||||||||||    
T  214417 ttgacatgtgcgcagtggttgattgagacatgcattttgaaatggagagagt 214366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University