View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19775_low_2 (Length: 520)

Name: NF19775_low_2
Description: NF19775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19775_low_2
NF19775_low_2
[»] chr1 (20 HSPs)
chr1 (83-503)||(48064240-48064698)
chr1 (436-493)||(7028233-7028290)
chr1 (268-319)||(48069813-48069864)
chr1 (437-483)||(15565905-15565951)
chr1 (438-487)||(24915125-24915174)
chr1 (436-484)||(9572180-9572228)
chr1 (436-484)||(38578477-38578525)
chr1 (268-319)||(48102308-48102359)
chr1 (433-484)||(51190811-51190862)
chr1 (435-481)||(30815706-30815752)
chr1 (443-493)||(33339499-33339549)
chr1 (460-493)||(6659644-6659677)
chr1 (438-483)||(13809949-13809994)
chr1 (451-483)||(4777372-4777404)
chr1 (438-482)||(15477530-15477574)
chr1 (433-493)||(36151574-36151634)
chr1 (449-493)||(37842440-37842484)
chr1 (436-480)||(39658552-39658596)
chr1 (438-486)||(41184724-41184772)
chr1 (444-484)||(42351986-42352026)
[»] chr5 (21 HSPs)
chr5 (434-493)||(37063144-37063203)
chr5 (436-483)||(29117002-29117049)
chr5 (444-483)||(35135742-35135781)
chr5 (455-493)||(4014515-4014553)
chr5 (445-487)||(35960361-35960403)
chr5 (444-493)||(7096207-7096256)
chr5 (452-493)||(12407749-12407790)
chr5 (436-493)||(12425512-12425569)
chr5 (444-485)||(28586846-28586887)
chr5 (436-481)||(32969189-32969234)
chr5 (428-481)||(40048344-40048397)
chr5 (455-484)||(42569071-42569100)
chr5 (436-484)||(465904-465952)
chr5 (436-484)||(3566390-3566438)
chr5 (455-487)||(7853605-7853637)
chr5 (455-487)||(10303748-10303780)
chr5 (444-484)||(14295456-14295496)
chr5 (436-484)||(29935421-29935469)
chr5 (455-487)||(35095874-35095906)
chr5 (437-493)||(37112331-37112387)
chr5 (452-484)||(39594758-39594790)
[»] chr8 (18 HSPs)
chr8 (437-493)||(26215437-26215493)
chr8 (433-482)||(30600418-30600467)
chr8 (449-493)||(39392746-39392790)
chr8 (434-481)||(2100758-2100805)
chr8 (444-483)||(26820150-26820189)
chr8 (436-482)||(3537103-3537149)
chr8 (445-483)||(8799356-8799394)
chr8 (455-493)||(14482143-14482181)
chr8 (443-493)||(25881549-25881599)
chr8 (433-487)||(29168961-29169015)
chr8 (451-493)||(42597342-42597384)
chr8 (438-487)||(10758330-10758379)
chr8 (438-487)||(29205755-29205804)
chr8 (436-484)||(2364545-2364593)
chr8 (435-487)||(2605966-2606018)
chr8 (444-484)||(27728101-27728141)
chr8 (443-483)||(38561677-38561717)
chr8 (443-483)||(40728497-40728537)
[»] chr2 (20 HSPs)
chr2 (437-493)||(13866830-13866886)
chr2 (437-493)||(3102634-3102690)
chr2 (444-484)||(17952781-17952821)
chr2 (444-483)||(1939412-1939451)
chr2 (437-484)||(4026767-4026814)
chr2 (433-487)||(33192140-33192194)
chr2 (438-483)||(3611177-3611222)
chr2 (436-493)||(5133713-5133770)
chr2 (443-484)||(9878761-9878802)
chr2 (455-484)||(26143732-26143761)
chr2 (436-493)||(34339064-34339121)
chr2 (444-493)||(37033985-37034034)
chr2 (436-493)||(42457889-42457946)
chr2 (455-483)||(3932301-3932329)
chr2 (444-484)||(31740039-31740079)
chr2 (437-493)||(32694153-32694209)
chr2 (436-480)||(36114595-36114639)
chr2 (433-481)||(36863694-36863742)
chr2 (444-472)||(37292427-37292455)
chr2 (440-484)||(44438915-44438959)
[»] chr4 (20 HSPs)
chr4 (433-484)||(17884018-17884069)
chr4 (440-493)||(3155544-3155597)
chr4 (444-485)||(20936082-20936123)
chr4 (429-484)||(29912899-29912953)
chr4 (436-483)||(47800581-47800628)
chr4 (444-486)||(4071830-4071872)
chr4 (445-487)||(27405998-27406040)
chr4 (433-487)||(46013369-46013423)
chr4 (436-493)||(21953214-21953271)
chr4 (444-493)||(28581990-28582038)
chr4 (444-493)||(30338672-30338721)
chr4 (444-493)||(47970259-47970308)
chr4 (444-484)||(2702990-2703030)
chr4 (443-487)||(3662295-3662339)
chr4 (433-493)||(7601700-7601760)
chr4 (427-483)||(27623586-27623642)
chr4 (451-483)||(30024651-30024683)
chr4 (444-484)||(32724069-32724109)
chr4 (449-493)||(51044544-51044588)
chr4 (444-492)||(54325117-54325165)
[»] chr3 (18 HSPs)
chr3 (438-484)||(30956700-30956746)
chr3 (438-484)||(30972512-30972558)
chr3 (436-483)||(23952178-23952225)
chr3 (436-487)||(25447316-25447367)
chr3 (443-493)||(24268234-24268284)
chr3 (443-493)||(33882969-33883019)
chr3 (438-484)||(35959530-35959576)
chr3 (437-483)||(54775079-54775125)
chr3 (444-493)||(1395612-1395661)
chr3 (436-496)||(1816520-1816581)
chr3 (428-493)||(33307516-33307581)
chr3 (451-484)||(36783421-36783454)
chr3 (434-483)||(53736183-53736232)
chr3 (455-487)||(33405258-33405290)
chr3 (456-484)||(37689183-37689211)
chr3 (444-484)||(38462231-38462271)
chr3 (436-484)||(44061095-44061143)
chr3 (444-484)||(49586996-49587036)
[»] chr7 (16 HSPs)
chr7 (444-484)||(40689066-40689106)
chr7 (436-484)||(42656465-42656513)
chr7 (436-483)||(34083597-34083644)
chr7 (434-477)||(46531490-46531533)
chr7 (436-482)||(18749882-18749928)
chr7 (440-493)||(35808980-35809033)
chr7 (455-492)||(37832230-37832267)
chr7 (443-484)||(47004037-47004078)
chr7 (436-493)||(49060481-49060538)
chr7 (450-486)||(2999139-2999175)
chr7 (437-493)||(27626197-27626253)
chr7 (433-493)||(28613603-28613663)
chr7 (444-484)||(30160970-30161010)
chr7 (437-493)||(30496645-30496701)
chr7 (433-493)||(31341135-31341195)
chr7 (455-487)||(45004713-45004745)
[»] chr6 (13 HSPs)
chr6 (444-484)||(1402946-1402986)
chr6 (436-472)||(4420607-4420643)
chr6 (436-503)||(507151-507218)
chr6 (437-484)||(2735019-2735066)
chr6 (437-483)||(5328925-5328971)
chr6 (434-492)||(8349734-8349792)
chr6 (455-493)||(29274320-29274358)
chr6 (451-496)||(781323-781368)
chr6 (444-493)||(7354145-7354194)
chr6 (444-484)||(2027486-2027526)
chr6 (436-484)||(9093628-9093676)
chr6 (433-481)||(10154174-10154222)
chr6 (443-487)||(24774705-24774749)
[»] scaffold0590 (1 HSPs)
scaffold0590 (446-493)||(1156-1203)
[»] scaffold0275 (1 HSPs)
scaffold0275 (446-493)||(2772-2819)
[»] scaffold0020 (1 HSPs)
scaffold0020 (449-487)||(160057-160095)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 83 - 503
Target Start/End: Complemental strand, 48064698 - 48064240
Alignment:
Q  83 gagttaatgaacggttacttaccaactgcaatgtttgacggaaaatggatatataatggacggtgcataagttgaagggttgtttgtttg---------- 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||              
T  48064698 gagttaatgaacggttacttaccaactgcaatgtttgacggaaaatggatatatagtggacggtgcataagttgaagggttgtttgtttgtttgtttgtt 48064599  T
Q  173 ------ataaatcatacaatatgaaggtcggtgcagcagagctatgcattttgttgttcaccacatcttgccttcttcacttttcatcagagctacaaca 266  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48064598 tgtttgataaatcatacaatatgaaggtcggtgcagcagagctatgcattttgttgttcaccacatcttgccttcttcacttttcatcagagctacaaca 48064499  T
Q  267 ttctatgccttatgattattctgctactactcaggcaatgccactaccttatctcttctttattactagt-ttttatataccgacaaaaaatctgagtgc 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  48064498 ttctatgccttatgattattctgctactactcaggcaatgccacttccttatctcttctttattactagttttttatataccgacaaaaaatcttagtgc 48064399  T
Q  366 ataaacacttttgacactgattctgagaatttattatcacagcttatcaattgtttataagttcttt---------------------taacttatacaa 444  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||                     ||||||||||||    
T  48064398 ataaacacttgtgacactgattctgagaatttatgatcacagcttatcaattgtttataagttctttttaacttatgaaatcaacttataacttatacaa 48064299  T
Q  445 aaatagttttactttattttatcttttgctatagaaatagtttctacattaggactaat 503  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48064298 aaatagttttactttattttatcttttgctatagaaattgtttctacattaggactaat 48064240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 436 - 493
Target Start/End: Complemental strand, 7028290 - 7028233
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    |||||||||||| |  || ||||||||||||||||||||||||||||||||| |||||    
T  7028290 cttatacaaaaacaacttaactttattttatcttttgctatagaaatagtttatacat 7028233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 319
Target Start/End: Complemental strand, 48069864 - 48069813
Alignment:
Q  268 tctatgccttatgattattctgctactactcaggcaatgccactaccttatc 319  Q
    |||||||||||||||||||||||||| ||| |||||||| |||||| |||||    
T  48069864 tctatgccttatgattattctgctacgactgaggcaatgtcactactttatc 48069813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 483
Target Start/End: Original strand, 15565905 - 15565951
Alignment:
Q  437 ttatacaaaaatagttttactttattttatcttttgctatagaaata 483  Q
    ||||||||||||||||| |||||||||||||||||||| | ||||||    
T  15565905 ttatacaaaaatagtttgactttattttatcttttgctttggaaata 15565951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 438 - 487
Target Start/End: Original strand, 24915125 - 24915174
Alignment:
Q  438 tatacaaaaatagttttactttattttatcttttgctatagaaatagttt 487  Q
    |||||||||| | ||| ||||||||||||||| |||||||||||||||||    
T  24915125 tatacaaaaacaatttaactttattttatcttctgctatagaaatagttt 24915174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 484
Target Start/End: Original strand, 9572180 - 9572228
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||||||||||  | ||| ||||||||||||||||||||||||||||||    
T  9572180 cttatacaaaagcaatttaactttattttatcttttgctatagaaatag 9572228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 484
Target Start/End: Complemental strand, 38578525 - 38578477
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||||||||||||| ||| ||||||| |||||||||| |||||||||||    
T  38578525 cttatacaaaaataatttaactttatgttatcttttgttatagaaatag 38578477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 319
Target Start/End: Complemental strand, 48102359 - 48102308
Alignment:
Q  268 tctatgccttatgattattctgctactactcaggcaatgccactaccttatc 319  Q
    |||||||||||||||||||||||||| ||  |||||||| |||||| |||||    
T  48102359 tctatgccttatgattattctgctacgaccgaggcaatgtcactactttatc 48102308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 484
Target Start/End: Complemental strand, 51190862 - 51190811
Alignment:
Q  433 taacttatacaaaaatagttttactttattttatcttttgctatagaaatag 484  Q
    ||||||||||||||| | ||| |||||||||||||||||||| || ||||||    
T  51190862 taacttatacaaaaacaatttaactttattttatcttttgctttacaaatag 51190811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 481
Target Start/End: Original strand, 30815706 - 30815752
Alignment:
Q  435 acttatacaaaaatagttttactttattttatcttttgctatagaaa 481  Q
    |||||||  |||||||||| |||||||||||||||||| ||||||||    
T  30815706 acttatatgaaaatagtttaactttattttatcttttgttatagaaa 30815752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 493
Target Start/End: Original strand, 33339499 - 33339549
Alignment:
Q  443 aaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    ||||||||||| |||| ||||||||||||| ||||||||||| || |||||    
T  33339499 aaaaatagtttaacttcattttatcttttggtatagaaatagcttatacat 33339549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 493
Target Start/End: Complemental strand, 6659677 - 6659644
Alignment:
Q  460 attttatcttttgctatagaaatagtttctacat 493  Q
    |||||||||||||||||||||||||||| |||||    
T  6659677 attttatcttttgctatagaaatagtttatacat 6659644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 483
Target Start/End: Complemental strand, 13809994 - 13809949
Alignment:
Q  438 tatacaaaaatagttttactttattttatcttttgctatagaaata 483  Q
    |||||||||| | ||| ||||||||||||||||||||| |||||||    
T  13809994 tatacaaaaacaatttaactttattttatcttttgctaaagaaata 13809949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 483
Target Start/End: Original strand, 4777372 - 4777404
Alignment:
Q  451 ttttactttattttatcttttgctatagaaata 483  Q
    ||||| |||||||||||||||||||||||||||    
T  4777372 ttttattttattttatcttttgctatagaaata 4777404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 482
Target Start/End: Complemental strand, 15477574 - 15477530
Alignment:
Q  438 tatacaaaaatagttttactttattttatcttttgctatagaaat 482  Q
    |||||||||| | ||| ||||||||||||||||| ||||||||||    
T  15477574 tatacaaaaacaatttaactttattttatcttttactatagaaat 15477530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 493
Target Start/End: Original strand, 36151574 - 36151634
Alignment:
Q  433 taacttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    |||||||||| |||| | ||| |||||||||||||||||| ||| ||||||| || |||||    
T  36151574 taacttatacgaaaacaatttgactttattttatcttttgttattgaaatagcttatacat 36151634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 493
Target Start/End: Original strand, 37842440 - 37842484
Alignment:
Q  449 agttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    ||||| ||||||||| |||||||||||||||||||| || |||||    
T  37842440 agtttaactttatttcatcttttgctatagaaatagcttatacat 37842484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 480
Target Start/End: Original strand, 39658552 - 39658596
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaa 480  Q
    ||||||| |||||| ||| |||||| |||||||||||||||||||    
T  39658552 cttatacgaaaataatttaactttactttatcttttgctatagaa 39658596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 486
Target Start/End: Original strand, 41184724 - 41184772
Alignment:
Q  438 tatacaaaaatagttttactttattttatcttttgctatagaaatagtt 486  Q
    |||||||||| | ||| || |||||||||||||||||||| ||||||||    
T  41184724 tatacaaaaacaatttaacattattttatcttttgctataaaaatagtt 41184772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 484
Target Start/End: Original strand, 42351986 - 42352026
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||||||||| ||||||||||| |||||| |||||||||||    
T  42351986 aaaatagtttgactttattttaacttttgttatagaaatag 42352026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 434 - 493
Target Start/End: Original strand, 37063144 - 37063203
Alignment:
Q  434 aacttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    ||||||||  |||||||||| |||||||||||||||||| |||||||||||||| |||||    
T  37063144 aacttatatgaaaatagtttgactttattttatcttttgttatagaaatagtttatacat 37063203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 483
Target Start/End: Original strand, 29117002 - 29117049
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaata 483  Q
    ||||||| |||| ||||| |||||||||||||||||| ||||||||||    
T  29117002 cttatacgaaaacagtttgactttattttatcttttgttatagaaata 29117049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 483
Target Start/End: Original strand, 35135742 - 35135781
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaata 483  Q
    |||||||||| |||||||||||||||||| ||||||||||    
T  35135742 aaaatagtttgactttattttatcttttgttatagaaata 35135781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 493
Target Start/End: Original strand, 4014515 - 4014553
Alignment:
Q  455 actttattttatcttttgctatagaaatagtttctacat 493  Q
    |||||||||||||||||||||||||||||| || |||||    
T  4014515 actttattttatcttttgctatagaaatagcttatacat 4014553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 487
Target Start/End: Complemental strand, 35960403 - 35960361
Alignment:
Q  445 aaatagttttactttattttatcttttgctatagaaatagttt 487  Q
    ||||||||| |||||||||||||||||  ||||||||||||||    
T  35960403 aaatagtttgactttattttatcttttattatagaaatagttt 35960361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 493
Target Start/End: Original strand, 7096207 - 7096256
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    ||||| |||| |||||||||||||||||| ||||||||||| || |||||    
T  7096207 aaaatggtttgactttattttatcttttgttatagaaatagcttatacat 7096256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 493
Target Start/End: Original strand, 12407749 - 12407790
Alignment:
Q  452 tttactttattttatcttttgctatagaaatagtttctacat 493  Q
    ||||||||||||||||||||| ||||||||||| || |||||    
T  12407749 tttactttattttatcttttgttatagaaatagcttatacat 12407790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 493
Target Start/End: Complemental strand, 12425569 - 12425512
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    ||||||| |||| | ||| ||||||||||||||||| ||||| ||||||||| |||||    
T  12425569 cttatacgaaaacaatttaactttattttatcttttactatataaatagtttatacat 12425512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 485
Target Start/End: Original strand, 28586846 - 28586887
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatagt 485  Q
    |||| ||||| |||||||||||||||||| ||||||||||||    
T  28586846 aaaacagtttgactttattttatcttttgttatagaaatagt 28586887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 481
Target Start/End: Original strand, 32969189 - 32969234
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaa 481  Q
    |||||| ||||||| ||| |||||||||||||||||| ||||||||    
T  32969189 cttatataaaaataatttgactttattttatcttttgttatagaaa 32969234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 481
Target Start/End: Original strand, 40048344 - 40048397
Alignment:
Q  428 tcttttaacttatacaaaaatagttttactttattttatcttttgctatagaaa 481  Q
    ||||||||||| ||| |||||| | | |||||||||||||||||| ||||||||    
T  40048344 tcttttaacttttacgaaaataatataactttattttatcttttgttatagaaa 40048397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 484
Target Start/End: Original strand, 42569071 - 42569100
Alignment:
Q  455 actttattttatcttttgctatagaaatag 484  Q
    ||||||||||||||||||||||||||||||    
T  42569071 actttattttatcttttgctatagaaatag 42569100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 484
Target Start/End: Complemental strand, 465952 - 465904
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||||||||||| | ||| ||||||||||||||||||  ||||||||||    
T  465952 cttatacaaaaacaatttaactttattttatcttttgtcatagaaatag 465904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 484
Target Start/End: Original strand, 3566390 - 3566438
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||||||||||||| ||| |||||||||| ||||| | |||||||||||    
T  3566390 cttatacaaaaataatttaactttattttctctttgggtatagaaatag 3566438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 7853637 - 7853605
Alignment:
Q  455 actttattttatcttttgctatagaaatagttt 487  Q
    |||||||||||||||||| ||||||||||||||    
T  7853637 actttattttatcttttgttatagaaatagttt 7853605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 10303780 - 10303748
Alignment:
Q  455 actttattttatcttttgctatagaaatagttt 487  Q
    |||||||||||||||||| ||||||||||||||    
T  10303780 actttattttatcttttgttatagaaatagttt 10303748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 484
Target Start/End: Complemental strand, 14295496 - 14295456
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||| ||||| |||||||||||||||||| |||||||||||    
T  14295496 aaaacagtttgactttattttatcttttgttatagaaatag 14295456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 484
Target Start/End: Original strand, 29935421 - 29935469
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||||||||||||| ||| |||||||||||  |||||||| ||||||||    
T  29935421 cttatacaaaaataatttaactttattttactttttgctaaagaaatag 29935469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 487
Target Start/End: Original strand, 35095874 - 35095906
Alignment:
Q  455 actttattttatcttttgctatagaaatagttt 487  Q
    |||||||||||||||||| ||||||||||||||    
T  35095874 actttattttatcttttgttatagaaatagttt 35095906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 493
Target Start/End: Original strand, 37112331 - 37112387
Alignment:
Q  437 ttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    ||||||||||| | ||| ||||| |||||||||||||| ||||||||| || |||||    
T  37112331 ttatacaaaaacaatttaactttgttttatcttttgctgtagaaatagcttatacat 37112387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 484
Target Start/End: Complemental strand, 39594790 - 39594758
Alignment:
Q  452 tttactttattttatcttttgctatagaaatag 484  Q
    |||||||||||||||||||| ||||||||||||    
T  39594790 tttactttattttatctttttctatagaaatag 39594758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 437 - 493
Target Start/End: Complemental strand, 26215493 - 26215437
Alignment:
Q  437 ttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    |||||| |||||||||| |||||||||||||||||| ||||||||||| || |||||    
T  26215493 ttatacgaaaatagtttaactttattttatcttttgttatagaaatagcttatacat 26215437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 30600418 - 30600467
Alignment:
Q  433 taacttatacaaaaatagttttactttattttatcttttgctatagaaat 482  Q
    ||||||||||||||||||||  |||||||||||  |||||||||||||||    
T  30600418 taacttatacaaaaatagttcgactttattttagtttttgctatagaaat 30600467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 493
Target Start/End: Original strand, 39392746 - 39392790
Alignment:
Q  449 agttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    ||||| |||||||||||||||||| |||||||||||||| |||||    
T  39392746 agtttgactttattttatcttttgttatagaaatagtttatacat 39392790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 481
Target Start/End: Complemental strand, 2100805 - 2100758
Alignment:
Q  434 aacttatacaaaaatagttttactttattttatcttttgctatagaaa 481  Q
    ||||||||  |||||| ||| |||||||||||||||||||||||||||    
T  2100805 aacttatatgaaaatattttgactttattttatcttttgctatagaaa 2100758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 483
Target Start/End: Complemental strand, 26820189 - 26820150
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaata 483  Q
    |||||||||| |||||||||||||||||| ||||||||||    
T  26820189 aaaatagtttgactttattttatcttttgttatagaaata 26820150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 482
Target Start/End: Original strand, 3537103 - 3537149
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaat 482  Q
    ||||||| |||| | ||| ||||||||||||||||||||||||||||    
T  3537103 cttatacgaaaacaatttgactttattttatcttttgctatagaaat 3537149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 483
Target Start/End: Complemental strand, 8799394 - 8799356
Alignment:
Q  445 aaatagttttactttattttatcttttgctatagaaata 483  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  8799394 aaatagtttgactttattttatcttttgttatagaaata 8799356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 493
Target Start/End: Complemental strand, 14482181 - 14482143
Alignment:
Q  455 actttattttatcttttgctatagaaatagtttctacat 493  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  14482181 actttattttatcttttgttatagaaatagtttatacat 14482143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 493
Target Start/End: Original strand, 25881549 - 25881599
Alignment:
Q  443 aaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    |||| |||||| |||||||||||| |||||||||| ||||||||| |||||    
T  25881549 aaaattagtttgactttattttatgttttgctataaaaatagtttatacat 25881599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 487
Target Start/End: Original strand, 29168961 - 29169015
Alignment:
Q  433 taacttatacaaaaatagttttactttattttatcttttgctatagaaatagttt 487  Q
    |||| |||||||||||| ||| | || |||||||||||||||||||||| |||||    
T  29168961 taacatatacaaaaataatttaatttaattttatcttttgctatagaaacagttt 29169015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 493
Target Start/End: Complemental strand, 42597384 - 42597342
Alignment:
Q  451 ttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    |||||||||||||||||||||| ||||||||||| || |||||    
T  42597384 ttttactttattttatcttttgttatagaaatagcttatacat 42597342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 487
Target Start/End: Original strand, 10758330 - 10758379
Alignment:
Q  438 tatacaaaaatagttttactttattttatcttttgctatagaaatagttt 487  Q
    |||||||||| | ||| ||||||||||||  |||||||||||||||||||    
T  10758330 tatacaaaaacaatttaactttattttatgatttgctatagaaatagttt 10758379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 487
Target Start/End: Complemental strand, 29205804 - 29205755
Alignment:
Q  438 tatacaaaaatagttttactttattttatcttttgctatagaaatagttt 487  Q
    |||||||||| | ||| |||| |||||||||||| |||||||||||||||    
T  29205804 tatacaaaaacaatttaacttcattttatctttttctatagaaatagttt 29205755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 484
Target Start/End: Original strand, 2364545 - 2364593
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||||||||||  | ||| ||||||||||||||||||||||| ||||||    
T  2364545 cttatacaaaagaaatttgactttattttatcttttgctataaaaatag 2364593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 487
Target Start/End: Complemental strand, 2606018 - 2605966
Alignment:
Q  435 acttatacaaaaatagttttactttattttatcttttgctatagaaatagttt 487  Q
    ||||||| | ||||||||| |||| |||||||||||||  |||||||||||||    
T  2606018 acttatatagaaatagtttgacttaattttatcttttgtcatagaaatagttt 2605966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 484
Target Start/End: Original strand, 27728101 - 27728141
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||||||||| |||||||||||||||||  |||||||||||    
T  27728101 aaaatagtttgactttattttatctttttttatagaaatag 27728141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 483
Target Start/End: Complemental strand, 38561717 - 38561677
Alignment:
Q  443 aaaaatagttttactttattttatcttttgctatagaaata 483  Q
    ||||||||||| |||||||||||||||||| |||| |||||    
T  38561717 aaaaatagtttgactttattttatcttttgttatataaata 38561677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 483
Target Start/End: Original strand, 40728497 - 40728537
Alignment:
Q  443 aaaaatagttttactttattttatcttttgctatagaaata 483  Q
    ||||| ||||| |||||||||||||||||| ||||||||||    
T  40728497 aaaaacagtttgactttattttatcttttgttatagaaata 40728537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 437 - 493
Target Start/End: Complemental strand, 13866886 - 13866830
Alignment:
Q  437 ttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    ||||| ||||| ||||| |||| |||||||||||||||||||||||||||| |||||    
T  13866886 ttatataaaaacagtttgacttaattttatcttttgctatagaaatagtttatacat 13866830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 493
Target Start/End: Complemental strand, 3102690 - 3102634
Alignment:
Q  437 ttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    ||||| ||||||||||| |||||||||||| |||||||||| |||||| || |||||    
T  3102690 ttatataaaaatagtttgactttattttatattttgctataaaaatagcttatacat 3102634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 484
Target Start/End: Original strand, 17952781 - 17952821
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  17952781 aaaatagtttgactttattttatcttttgttatagaaatag 17952821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 483
Target Start/End: Original strand, 1939412 - 1939451
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaata 483  Q
    |||||||||| |||||||||||||||||| ||||||||||    
T  1939412 aaaatagtttcactttattttatcttttgttatagaaata 1939451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 484
Target Start/End: Complemental strand, 4026814 - 4026767
Alignment:
Q  437 ttatacaaaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||| |||||||| ||| ||||||||||||||||||||||| ||||||    
T  4026814 ttatgcaaaaataatttaactttattttatcttttgctataaaaatag 4026767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 487
Target Start/End: Complemental strand, 33192194 - 33192140
Alignment:
Q  433 taacttatacaaaaatagttttactttattttatcttttgctatagaaatagttt 487  Q
    |||||||||  |||| ||||| ||||||||||||||| || ||||||||||||||    
T  33192194 taacttatatgaaaacagtttgactttattttatcttatgttatagaaatagttt 33192140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 483
Target Start/End: Complemental strand, 3611222 - 3611177
Alignment:
Q  438 tatacaaaaatagttttactttattttatcttttgctatagaaata 483  Q
    |||||||||| | ||| ||||||||||| |||||||||||||||||    
T  3611222 tatacaaaaacaatttaactttattttaccttttgctatagaaata 3611177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 493
Target Start/End: Complemental strand, 5133770 - 5133713
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    |||||| ||||| |||||  ||||||||||||||||| ||||||||||| || |||||    
T  5133770 cttatataaaaacagtttatctttattttatcttttgttatagaaatagcttatacat 5133713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 484
Target Start/End: Original strand, 9878761 - 9878802
Alignment:
Q  443 aaaaatagttttactttattttatcttttgctatagaaatag 484  Q
    ||||||||||| | |||||||||||||||| |||||||||||    
T  9878761 aaaaatagtttgagtttattttatcttttgttatagaaatag 9878802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 484
Target Start/End: Original strand, 26143732 - 26143761
Alignment:
Q  455 actttattttatcttttgctatagaaatag 484  Q
    ||||||||||||||||||||||||||||||    
T  26143732 actttattttatcttttgctatagaaatag 26143761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 493
Target Start/End: Complemental strand, 34339121 - 34339064
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    ||||||| |||| ||| | |||||||||||||||| |||||||||| ||||| |||||    
T  34339121 cttatacgaaaacagtctgactttattttatctttagctatagaaaaagtttatacat 34339064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 37034034 - 37033985
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    ||||| |||| |||||||||||||||||  |||||||||||||| |||||    
T  37034034 aaaatcgtttgactttattttatctttttttatagaaatagtttatacat 37033985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 493
Target Start/End: Complemental strand, 42457946 - 42457889
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    |||| ||||||| | ||| ||||||||||||||||| |||||||||||| || |||||    
T  42457946 cttaaacaaaaacaatttaactttattttatcttttactatagaaatagattatacat 42457889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 483
Target Start/End: Complemental strand, 3932329 - 3932301
Alignment:
Q  455 actttattttatcttttgctatagaaata 483  Q
    |||||||||||||||||||||||||||||    
T  3932329 actttattttatcttttgctatagaaata 3932301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 484
Target Start/End: Original strand, 31740039 - 31740079
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||||||||| |||||||||||||||| | |||||||||||    
T  31740039 aaaatagtttgactttattttatctttagttatagaaatag 31740079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 493
Target Start/End: Complemental strand, 32694209 - 32694153
Alignment:
Q  437 ttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    ||||| ||||||||| | | |||||||||||||||| ||||||||||| || |||||    
T  32694209 ttatataaaaatagtctgattttattttatcttttgatatagaaatagcttatacat 32694153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 480
Target Start/End: Original strand, 36114595 - 36114639
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaa 480  Q
    |||||||||||| | ||| |||||||||||||||||| |||||||    
T  36114595 cttatacaaaaacaatttaactttattttatcttttgttatagaa 36114639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 481
Target Start/End: Original strand, 36863694 - 36863742
Alignment:
Q  433 taacttatacaaaaatagttttactttattttatcttttgctatagaaa 481  Q
    ||||||||| |||||| |||| ||||||||||||||||| ||| |||||    
T  36863694 taacttatataaaaattgtttgactttattttatcttttactagagaaa 36863742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 472
Target Start/End: Original strand, 37292427 - 37292455
Alignment:
Q  444 aaaatagttttactttattttatcttttg 472  Q
    |||||||||||||||||||||||||||||    
T  37292427 aaaatagttttactttattttatcttttg 37292455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 484
Target Start/End: Original strand, 44438915 - 44438959
Alignment:
Q  440 tacaaaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||||||| ||||| |||||||||||||||||||||  |||||||    
T  44438915 tacaaaaacagtttgactttattttatcttttgctacggaaatag 44438959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 484
Target Start/End: Complemental strand, 17884069 - 17884018
Alignment:
Q  433 taacttatacaaaaatagttttactttattttatcttttgctatagaaatag 484  Q
    ||||||||||||||| | ||| |||||||||||||||||| |||||||||||    
T  17884069 taacttatacaaaaacaatttaactttattttatcttttgttatagaaatag 17884018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 440 - 493
Target Start/End: Complemental strand, 3155597 - 3155544
Alignment:
Q  440 tacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    |||||||| | ||| |||||||||||||||||||||||||||||| || |||||    
T  3155597 tacaaaaacaatttaactttattttatcttttgctatagaaatagcttatacat 3155544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 444 - 485
Target Start/End: Original strand, 20936082 - 20936123
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatagt 485  Q
    |||||||||| |||||||||||||||||| ||||||||||||    
T  20936082 aaaatagtttgactttattttatcttttgttatagaaatagt 20936123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 484
Target Start/End: Complemental strand, 29912953 - 29912899
Alignment:
Q  429 cttttaacttatacaaaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||||||| |||||||||  | |||||||||||||||| |||||||||||||||||    
T  29912953 cttttaacatatacaaaacaa-ttttactttattttattttttgctatagaaatag 29912899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 483
Target Start/End: Complemental strand, 47800628 - 47800581
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaata 483  Q
    |||||||||||| | ||| |||||||||||||||||| ||||||||||    
T  47800628 cttatacaaaaacattttaactttattttatcttttgttatagaaata 47800581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 486
Target Start/End: Complemental strand, 4071872 - 4071830
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatagtt 486  Q
    |||||| ||| |||||||||||||||||| |||||||||||||    
T  4071872 aaaataatttgactttattttatcttttgttatagaaatagtt 4071830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 487
Target Start/End: Complemental strand, 27406040 - 27405998
Alignment:
Q  445 aaatagttttactttattttatcttttgctatagaaatagttt 487  Q
    |||||||||  |||||||||||||||| |||||||||||||||    
T  27406040 aaatagtttgcctttattttatcttttactatagaaatagttt 27405998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 487
Target Start/End: Original strand, 46013369 - 46013423
Alignment:
Q  433 taacttatacaaaaatagttttactttattttatcttttgctatagaaatagttt 487  Q
    ||||||||| ||||| ||||| |||||||||||||||||| |  |||||||||||    
T  46013369 taacttatataaaaacagtttgactttattttatcttttgttccagaaatagttt 46013423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 493
Target Start/End: Complemental strand, 21953271 - 21953214
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    |||||| ||||| ||||| ||||||||||  |||||| |||||||||||||| |||||    
T  21953271 cttatataaaaagagtttgactttattttcccttttgttatagaaatagtttatacat 21953214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 493
Target Start/End: Original strand, 28581990 - 28582038
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    |||||||||| ||||||||||||||||||||| | ||||||||| |||||    
T  28581990 aaaatagtttgactttattttatcttttgcta-aaaaatagtttatacat 28582038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 493
Target Start/End: Original strand, 30338672 - 30338721
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    |||| ||||| |||||||| ||||||||| |||||||||||||| |||||    
T  30338672 aaaacagtttaactttattctatcttttgttatagaaatagtttatacat 30338721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 47970308 - 47970259
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    |||||||||| |||| ||||||||||||| ||||||||||| || |||||    
T  47970308 aaaatagtttgacttcattttatcttttgttatagaaatagcttatacat 47970259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 484
Target Start/End: Complemental strand, 2703030 - 2702990
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||| ||||| ||||||||||||||||||||||| ||||||    
T  2703030 aaaaaagtttaactttattttatcttttgctatataaatag 2702990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 487
Target Start/End: Complemental strand, 3662339 - 3662295
Alignment:
Q  443 aaaaatagttttactttattttatcttttgctatagaaatagttt 487  Q
    ||||| ||||| |||||||||||||||||| ||||| ||||||||    
T  3662339 aaaaacagtttgactttattttatcttttgttataggaatagttt 3662295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 493
Target Start/End: Complemental strand, 7601760 - 7601700
Alignment:
Q  433 taacttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    |||| |||||||||| | ||| ||||||||||||| |||||||||| ||||| || |||||    
T  7601760 taacatatacaaaaacaatttaactttattttatcctttgctataggaatagcttatacat 7601700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 483
Target Start/End: Complemental strand, 27623642 - 27623586
Alignment:
Q  427 ttcttttaacttatacaaaaatagttttactttattttatcttttgctatagaaata 483  Q
    ||||| || ||||||  |||||||||| |||||||||||||||||| |||| |||||    
T  27623642 ttcttatagcttatattaaaatagtttgactttattttatcttttgttatacaaata 27623586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 483
Target Start/End: Complemental strand, 30024683 - 30024651
Alignment:
Q  451 ttttactttattttatcttttgctatagaaata 483  Q
    |||||||||||||||||||||| ||||||||||    
T  30024683 ttttactttattttatcttttgttatagaaata 30024651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 484
Target Start/End: Complemental strand, 32724109 - 32724069
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||||||||| ||||||||||||||||||  ||||||||||    
T  32724109 aaaatagtttgactttattttatcttttgtaatagaaatag 32724069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 493
Target Start/End: Original strand, 51044544 - 51044588
Alignment:
Q  449 agttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    ||||| |||||||||||||||||| ||||||||||| || |||||    
T  51044544 agtttgactttattttatcttttgttatagaaatagcttatacat 51044588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 492
Target Start/End: Original strand, 54325117 - 54325165
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatagtttctaca 492  Q
    |||| ||||| ||||||||||||||||||  ||||||||||||| ||||    
T  54325117 aaaacagtttgactttattttatcttttgtaatagaaatagtttataca 54325165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 484
Target Start/End: Original strand, 30956700 - 30956746
Alignment:
Q  438 tatacaaaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||||||||| | ||| ||||||||||||||||||||||||||||||    
T  30956700 tatacaaaaacaatttaactttattttatcttttgctatagaaatag 30956746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 484
Target Start/End: Original strand, 30972512 - 30972558
Alignment:
Q  438 tatacaaaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||||||||| | ||| ||||||||||||||||||||||||||||||    
T  30972512 tatacaaaaacaatttaactttattttatcttttgctatagaaatag 30972558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 483
Target Start/End: Original strand, 23952178 - 23952225
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaata 483  Q
    |||||||||||||| ||| |||| ||||||||||||| ||||||||||    
T  23952178 cttatacaaaaatactttgacttaattttatcttttgttatagaaata 23952225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 487
Target Start/End: Original strand, 25447316 - 25447367
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaatagttt 487  Q
    |||||||||||| | ||| | ||||||||||||||| |||||||||||||||    
T  25447316 cttatacaaaaacaatttaagtttattttatcttttactatagaaatagttt 25447367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 493
Target Start/End: Original strand, 24268234 - 24268284
Alignment:
Q  443 aaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    ||||| ||||| |||| |||||| ||||||||||||||||||||| |||||    
T  24268234 aaaaaaagtttgacttgattttaacttttgctatagaaatagtttatacat 24268284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 493
Target Start/End: Complemental strand, 33883019 - 33882969
Alignment:
Q  443 aaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    ||||||| ||| |||||||||||||||||| |||||||||| ||| |||||    
T  33883019 aaaaataatttcactttattttatcttttgttatagaaataatttatacat 33882969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 484
Target Start/End: Original strand, 35959530 - 35959576
Alignment:
Q  438 tatacaaaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||||||||||| ||| ||||||||||||| ||| ||||||||||||    
T  35959530 tatacaaaaataatttaactttattttatccttttctatagaaatag 35959576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 483
Target Start/End: Complemental strand, 54775125 - 54775079
Alignment:
Q  437 ttatacaaaaatagttttactttattttatcttttgctatagaaata 483  Q
    ||||| |||||| |||| |||||||||||||||||| ||||||||||    
T  54775125 ttatataaaaatggtttgactttattttatcttttgttatagaaata 54775079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 1395661 - 1395612
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    |||||| ||| |||||||||||||||||| ||||||||||| || |||||    
T  1395661 aaaataatttgactttattttatcttttgttatagaaatagcttatacat 1395612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 496
Target Start/End: Complemental strand, 1816581 - 1816520
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctat-agaaatagtttctacattag 496  Q
    |||||||||||| ||||| |||||||||||||||||  ||| | ||||||||| ||||||||    
T  1816581 cttatacaaaaacagtttgactttattttatcttttattataaaaaatagtttatacattag 1816520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 493
Target Start/End: Original strand, 33307516 - 33307581
Alignment:
Q  428 tcttttaacttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    |||| ||||||||| |||||||||||  | || |||||||||||||| |||||||| ||| |||||    
T  33307516 tcttataacttatataaaaatagtttggcattgttttatcttttgctctagaaataatttatacat 33307581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 484
Target Start/End: Original strand, 36783421 - 36783454
Alignment:
Q  451 ttttactttattttatcttttgctatagaaatag 484  Q
    |||||||||||||||||||||| |||||||||||    
T  36783421 ttttactttattttatcttttggtatagaaatag 36783454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 483
Target Start/End: Original strand, 53736183 - 53736232
Alignment:
Q  434 aacttatacaaaaatagttttactttattttatcttttgctatagaaata 483  Q
    ||||||||  |||||||||| || ||||||||||||||| ||||||||||    
T  53736183 aacttatatgaaaatagtttgacattattttatcttttgttatagaaata 53736232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 487
Target Start/End: Original strand, 33405258 - 33405290
Alignment:
Q  455 actttattttatcttttgctatagaaatagttt 487  Q
    ||||||||||| |||||||||||||||||||||    
T  33405258 actttattttaccttttgctatagaaatagttt 33405290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 456 - 484
Target Start/End: Complemental strand, 37689211 - 37689183
Alignment:
Q  456 ctttattttatcttttgctatagaaatag 484  Q
    |||||||||||||||||||||||||||||    
T  37689211 ctttattttatcttttgctatagaaatag 37689183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 484
Target Start/End: Complemental strand, 38462271 - 38462231
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||| ||||| |||||||||||||||||| |||||||||||    
T  38462271 aaaacagtttgactttattttatcttttggtatagaaatag 38462231  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 484
Target Start/End: Original strand, 44061095 - 44061143
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||||| ||||| | ||| || |||||||||||||||||||||||||||    
T  44061095 cttatagaaaaacaatttaaccttattttatcttttgctatagaaatag 44061143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 484
Target Start/End: Original strand, 49586996 - 49587036
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||| ||||| |||||||||||||||||| |||||||||||    
T  49586996 aaaacagtttgactttattttatcttttgttatagaaatag 49587036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 484
Target Start/End: Original strand, 40689066 - 40689106
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||||| ||| ||||||||||||||||||||||||||||||    
T  40689066 aaaataatttaactttattttatcttttgctatagaaatag 40689106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 484
Target Start/End: Complemental strand, 42656513 - 42656465
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||||||||||||  ||| |||||||||||||||||| |||||||||||    
T  42656513 cttatacaaaaatgatttgactttattttatcttttgttatagaaatag 42656465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 483
Target Start/End: Original strand, 34083597 - 34083644
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaata 483  Q
    |||||||| ||| | ||| |||||||||||||||||||||||||||||    
T  34083597 cttatacacaaacaatttaactttattttatcttttgctatagaaata 34083644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 477
Target Start/End: Complemental strand, 46531533 - 46531490
Alignment:
Q  434 aacttatacaaaaatagttttactttattttatcttttgctata 477  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||    
T  46531533 aacttatataaaaacagtttgactttattttatcttttgctata 46531490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 482
Target Start/End: Original strand, 18749882 - 18749928
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaat 482  Q
    |||||| ||||||||||| |||||| ||||||||||| |||||||||    
T  18749882 cttatataaaaatagtttgactttactttatcttttgttatagaaat 18749928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 493
Target Start/End: Original strand, 35808980 - 35809033
Alignment:
Q  440 tacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    ||||||| |||||| ||| |||||||||||||| ||||||||||| || |||||    
T  35808980 tacaaaattagtttgactatattttatcttttgttatagaaatagcttatacat 35809033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 492
Target Start/End: Original strand, 37832230 - 37832267
Alignment:
Q  455 actttattttatcttttgctatagaaatagtttctaca 492  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  37832230 actttattttatattttgctatagaaatagtttataca 37832267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 484
Target Start/End: Complemental strand, 47004078 - 47004037
Alignment:
Q  443 aaaaatagttttactttattttatcttttgctatagaaatag 484  Q
    ||||||||||| |||||||||||||| ||| |||||||||||    
T  47004078 aaaaatagtttgactttattttatctattgttatagaaatag 47004037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 493
Target Start/End: Complemental strand, 49060538 - 49060481
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    |||||| ||||||| ||| |||||||||||| ||||| ||||||||||| || |||||    
T  49060538 cttatataaaaataatttgactttattttattttttgttatagaaatagcttatacat 49060481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 486
Target Start/End: Complemental strand, 2999175 - 2999139
Alignment:
Q  450 gttttactttattttatcttttgctatagaaatagtt 486  Q
    |||| |||||||||||||||||| |||||||||||||    
T  2999175 gtttgactttattttatcttttgttatagaaatagtt 2999139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 493
Target Start/End: Original strand, 27626197 - 27626253
Alignment:
Q  437 ttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    ||||| || |||||||| ||||||||||| |||||| ||||||||||| || |||||    
T  27626197 ttatataataatagtttgactttattttagcttttgatatagaaatagcttatacat 27626253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 493
Target Start/End: Original strand, 28613603 - 28613663
Alignment:
Q  433 taacttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    ||||||||||||||| | ||| ||||| |||||||||||| |||| |||||| || |||||    
T  28613603 taacttatacaaaaacaatttaactttgttttatcttttgttataaaaatagcttatacat 28613663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 484
Target Start/End: Original strand, 30160970 - 30161010
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||| ||||| ||||||||||||||||||| ||||||||||    
T  30160970 aaaacagtttgactttattttatcttttgccatagaaatag 30161010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 493
Target Start/End: Complemental strand, 30496701 - 30496645
Alignment:
Q  437 ttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    |||||| |||| | ||| |||||||||||| ||||| |||||||||||||| |||||    
T  30496701 ttatacgaaaacaatttgactttattttatattttgttatagaaatagtttatacat 30496645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 493
Target Start/End: Complemental strand, 31341195 - 31341135
Alignment:
Q  433 taacttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    ||||||||| ||||  ||||| |||||||||||||||||| |||| |||||| || |||||    
T  31341195 taacttatataaaaccagtttgactttattttatcttttgttatacaaatagcttatacat 31341135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 45004745 - 45004713
Alignment:
Q  455 actttattttatcttttgctatagaaatagttt 487  Q
    ||||||||||||||||||||||| |||||||||    
T  45004745 actttattttatcttttgctataaaaatagttt 45004713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 484
Target Start/End: Complemental strand, 1402986 - 1402946
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  1402986 aaaatagtttaactttattttatcttttgttatagaaatag 1402946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 472
Target Start/End: Complemental strand, 4420643 - 4420607
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttg 472  Q
    |||||||||||||||||| ||||||||||||||||||    
T  4420643 cttatacaaaaatagtttgactttattttatcttttg 4420607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 503
Target Start/End: Complemental strand, 507218 - 507151
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctacattaggactaat 503  Q
    |||||||||||| | | | |||||||||||||||||| |||||||||| ||| ||||| || ||||||    
T  507218 cttatacaaaaacaatctaactttattttatcttttgttatagaaataatttatacataagcactaat 507151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 484
Target Start/End: Complemental strand, 2735066 - 2735019
Alignment:
Q  437 ttatacaaaaatagttttactttattttatcttttgctatagaaatag 484  Q
    ||||||||||||| ||| |||||||||||||||||| |||||| ||||    
T  2735066 ttatacaaaaataatttaactttattttatcttttgttatagacatag 2735019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 483
Target Start/End: Complemental strand, 5328971 - 5328925
Alignment:
Q  437 ttatacaaaaatagttttactttattttatcttttgctatagaaata 483  Q
    ||||| |||||| |||| |||||||||||||||||| ||||||||||    
T  5328971 ttatataaaaatggtttgactttattttatcttttgttatagaaata 5328925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 492
Target Start/End: Original strand, 8349734 - 8349792
Alignment:
Q  434 aacttatacaaaaatagttttactttattttatcttttgctatagaaatagtttctaca 492  Q
    |||||||| ||||| | ||| |||||||||||||||||| || ||||||||||| ||||    
T  8349734 aacttatataaaaacaatttaactttattttatcttttgttagagaaatagtttataca 8349792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 493
Target Start/End: Original strand, 29274320 - 29274358
Alignment:
Q  455 actttattttatcttttgctatagaaatagtttctacat 493  Q
    |||||||||||||||||||||||||||||| || |||||    
T  29274320 actttattttatcttttgctatagaaatagcttatacat 29274358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 496
Target Start/End: Complemental strand, 781368 - 781323
Alignment:
Q  451 ttttactttattttatcttttgctatagaaatagtttctacattag 496  Q
    |||||||||||||||||||||  ||||||||||| || ||||||||    
T  781368 ttttactttattttatcttttattatagaaatagcttatacattag 781323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 7354194 - 7354145
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    |||||||||  | |||||||||||||||| |||||||||||||| |||||    
T  7354194 aaaatagttcgattttattttatcttttgttatagaaatagtttatacat 7354145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 484
Target Start/End: Original strand, 2027486 - 2027526
Alignment:
Q  444 aaaatagttttactttattttatcttttgctatagaaatag 484  Q
    |||||||||| |||||||||||||||||| |||| ||||||    
T  2027486 aaaatagtttgactttattttatcttttgttataaaaatag 2027526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 484
Target Start/End: Original strand, 9093628 - 9093676
Alignment:
Q  436 cttatacaaaaatagttttactttattttatcttttgctatagaaatag 484  Q
    ||||||| |||| | ||| |||||||||||||||||| |||||||||||    
T  9093628 cttatacgaaaacaatttaactttattttatcttttgatatagaaatag 9093676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 481
Target Start/End: Complemental strand, 10154222 - 10154174
Alignment:
Q  433 taacttatacaaaaatagttttactttattttatcttttgctatagaaa 481  Q
    |||||||||  |||| ||||| ||||||||||||||||| |||||||||    
T  10154222 taacttatatgaaaacagtttgactttattttatctttttctatagaaa 10154174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 487
Target Start/End: Complemental strand, 24774749 - 24774705
Alignment:
Q  443 aaaaatagttttactttattttatcttttgctatagaaatagttt 487  Q
    ||||| ||||| |||||||||||| ||||| ||||||||||||||    
T  24774749 aaaaacagtttgactttattttatattttgttatagaaatagttt 24774705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 493
Target Start/End: Original strand, 1156 - 1203
Alignment:
Q  446 aatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    |||||||| |||||||||||||||||| ||||||||||| || |||||    
T  1156 aatagtttgactttattttatcttttgttatagaaatagcttatacat 1203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 493
Target Start/End: Complemental strand, 2819 - 2772
Alignment:
Q  446 aatagttttactttattttatcttttgctatagaaatagtttctacat 493  Q
    |||||||| |||||||||||||||||| ||||||||||| || |||||    
T  2819 aatagtttgactttattttatcttttgttatagaaatagcttatacat 2772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 487
Target Start/End: Original strand, 160057 - 160095
Alignment:
Q  449 agttttactttattttatcttttgctatagaaatagttt 487  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  160057 agtttgactttattttatcttttgctataggaatagttt 160095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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