View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19775_low_4 (Length: 347)
Name: NF19775_low_4
Description: NF19775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19775_low_4 |
 |  |
|
| [»] scaffold0003 (2 HSPs) |
 |  |  |
|
| [»] scaffold0005 (2 HSPs) |
 |  |  |
|
| [»] scaffold0152 (1 HSPs) |
 |  |  |
|
| [»] scaffold0014 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr6 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 127 - 279
Target Start/End: Complemental strand, 27444279 - 27444127
Alignment:
| Q |
127 |
attgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatctaagggctaggattgtttggcgccta |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27444279 |
attgtgatttgtgccagccagcagcaagatcagatctatggctgataaataagtggcgcccaaaggtgtagatccaagggctaggattgtttggcgccta |
27444180 |
T |
 |
| Q |
227 |
aaaaagtaaaattagggtttggagtgttaactaggattatgaataagttagat |
279 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
27444179 |
aaaaagtagaattagggtttggagtgttaactacgattaggaataagttagat |
27444127 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 33053929 - 33054182
Alignment:
| Q |
1 |
tggtaaaacacagatacatggaaaagtataagccaattaaatgtgatgagagaaggtggaaagcaagcacacaatgcattaagtgacacataaggcaagg |
100 |
Q |
| |
|
||||| |||||| || |||| |||||||||||||||| |||||||| || |||| ||||||| ||||||| ||||||| ||| | ||||| |||| |
|
|
| T |
33053929 |
tggtacaacacatatgtatgggaaagtataagccaatttaatgtgataagggaagttggaaaggaagcacagtctgcattatgtggcg--taaggtaagg |
33054026 |
T |
 |
| Q |
101 |
agggaaaatttgaaattgaagtgtgcattgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatc |
200 |
Q |
| |
|
||||||||||||||| | ||| ||||||||||||| ||||| |||||||| |||| || || |||| ||||||| |||||||| ||| |||| |
|
|
| T |
33054027 |
agggaaaatttgaaaattttccgtgtgttgtgatttgtgctagccataagcaagattagatgtagggctcataattaagtggtgcccaaagatgttgatc |
33054126 |
T |
 |
| Q |
201 |
taagggctaggattgtttggcgcctaaaaaagtaaaattagggtttggagtgttaa |
256 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
33054127 |
caagggttaggattgattggcgcctaaaaaagtaggtttagggttttaagtgttaa |
33054182 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 31444805 - 31444771
Alignment:
| Q |
245 |
ttggagtgttaactaggattatgaataagttagat |
279 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31444805 |
ttggagtgttaactaggattaggaataagttagat |
31444771 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 9e-61; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 109 - 279
Target Start/End: Complemental strand, 26720407 - 26720237
Alignment:
| Q |
109 |
tttgaaattgaagtgtgcattgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatctaagggct |
208 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| ||||||||| |||| || ||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
26720407 |
tttgaaattgaagtgtgtattgtgatttgtgctagccaacagcaagattagatctatggctgataaataagtggtgcccaaaggtgtagatccaagggct |
26720308 |
T |
 |
| Q |
209 |
aggattgtttggcgcctaaaaaagtaaaattagggtttggagtgttaactaggattatgaataagttagat |
279 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26720307 |
aggattgtttggcgcctaaaaaagtaggattagggtttggagtgttaactaggattaggaataagttagat |
26720237 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 107 - 234
Target Start/End: Original strand, 14586727 - 14586854
Alignment:
| Q |
107 |
aatttgaaattgaagtgtgcattgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatctaaggg |
206 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| || ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14586727 |
aatttgaaattgaagtgtgtattgtgatttgtgctagtcagcaaaaagatcagatctacggctgataaataagtggcgcccaaaggtgtagatccaaggg |
14586826 |
T |
 |
| Q |
207 |
ctaggattgtttggcgcctaaaaaagta |
234 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
14586827 |
ctaggattgtttggcgcctaaaaaagta |
14586854 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 14586430 - 14586542
Alignment:
| Q |
1 |
tggtaaaacacagatacatggaaaagtataagccaattaaatgtgatgagagaaggtggaaagcaagcacacaatgcattaagtgacacataaggcaagg |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||| ||||||| || |||||||||| |
|
|
| T |
14586430 |
tggtaaaacacagatgcatggaaaagtataagtcaatttaatgtgataagggaaggtggaaagcaagcacacaatgcgttaagtg--acctaaggcaagg |
14586527 |
T |
 |
| Q |
101 |
agggaaaatttgaaa |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
14586528 |
agggaaaatttgaaa |
14586542 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 3650034 - 3649906
Alignment:
| Q |
128 |
ttgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatctaagggctaggattgtttggcgcctaa |
227 |
Q |
| |
|
||||||||||||| ||||| | ||||||||||| || | |||| |||| ||| ||||||| ||| |||| ||||| |||||||| ||||||||||| |
|
|
| T |
3650034 |
ttgtgatttgtgctagccataaacaagatcagatgtagggttcataattaagcggcacccaaagatgttgatccaagggttaggattgattggcgcctaa |
3649935 |
T |
 |
| Q |
228 |
aaaagtaaaattagggtttggagtgttaa |
256 |
Q |
| |
|
||||||| | ||||||||| |||||||| |
|
|
| T |
3649934 |
aaaagtagatttagggttttaagtgttaa |
3649906 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 32651290 - 32651324
Alignment:
| Q |
245 |
ttggagtgttaactaggattatgaataagttagat |
279 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32651290 |
ttggagtgttaactaggattaggaataagttagat |
32651324 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 38467731 - 38467765
Alignment:
| Q |
245 |
ttggagtgttaactaggattatgaataagttagat |
279 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
38467731 |
ttggagtgttaactaggattataaataagttagat |
38467765 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 127 - 279
Target Start/End: Original strand, 43082 - 43234
Alignment:
| Q |
127 |
attgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatctaagggctaggattgtttggcgccta |
226 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43082 |
attgtgatttgtgcaagccagcagcaagatcagatctatggctgataaataagtggcgcccaaaggtgtagatccaagggctaggattgtttggcgccta |
43181 |
T |
 |
| Q |
227 |
aaaaagtaaaattagggtttggagtgttaactaggattatgaataagttagat |
279 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
43182 |
aaaaagtagaattagggtttggagtgttaactacgattaggaataagttagat |
43234 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 127 - 256
Target Start/End: Original strand, 36898 - 37027
Alignment:
| Q |
127 |
attgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatctaagggctaggattgtttggcgccta |
226 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| || |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36898 |
attgtgatttgtgctagccatcagcaagatcagatctatggctgataaataagtggcaaccaaaggtgtagatccaagggctaggattgtttggcgccta |
36997 |
T |
 |
| Q |
227 |
aaaaagtaaaattagggtttggagtgttaa |
256 |
Q |
| |
|
|||||| | ||||||| |||| |||||||| |
|
|
| T |
36998 |
aaaaagaagaattaggatttgaagtgttaa |
37027 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 8e-49; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 127 - 253
Target Start/End: Complemental strand, 31688034 - 31687908
Alignment:
| Q |
127 |
attgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatctaagggctaggattgtttggcgccta |
226 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31688034 |
attgtgatttgtgctagccagcagcaagatcagatctatggctgataaataagtggcgcccaaaggtgtagatccaagggctaggattgtttggcgccta |
31687935 |
T |
 |
| Q |
227 |
aaaaagtaaaattagggtttggagtgt |
253 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
31687934 |
aaaaagtagaattagggtttggagtgt |
31687908 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 31896833 - 31896906
Alignment:
| Q |
127 |
attgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatc |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
31896833 |
attgtgatttgtgctagccagcagcaagatcagatctatgggtgataaataagtggcgcccaaaggtgtagatc |
31896906 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 31912542 - 31912615
Alignment:
| Q |
127 |
attgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatc |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
31912542 |
attgtgatttgtgctagccagcagcaagatcagatctatgggtgataaataagtggcgcccaaaggtgtagatc |
31912615 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 31946190 - 31946263
Alignment:
| Q |
127 |
attgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatc |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
31946190 |
attgtgatttgtgctagccagcagcaagatcagatctatgggtgataaataagtggcgcccaaaggtgtagatc |
31946263 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 19766095 - 19766049
Alignment:
| Q |
210 |
ggattgtttggcgcctaaaaaagtaaaattagggtttggagtgttaa |
256 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19766095 |
ggattgtttggcgcctaaaaaagtaggattagggtttggagtgttaa |
19766049 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 46233983 - 46234021
Alignment:
| Q |
245 |
ttggagtgttaactaggattatgaataagttagataact |
283 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
46233983 |
ttggagtgttaactaggattaggaataagttagataact |
46234021 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 312
Target Start/End: Original strand, 36324260 - 36324294
Alignment:
| Q |
278 |
ataacttgggataggtaggaatatgcctgtccaaa |
312 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36324260 |
ataacctgggataggtaggaatatgcctgtccaaa |
36324294 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 107 - 234
Target Start/End: Complemental strand, 230647 - 230520
Alignment:
| Q |
107 |
aatttgaaattgaagtgtgcattgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatctaaggg |
206 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| || ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
230647 |
aatttgaaattgaagtgtgtattgtgatttgtgctagtcagcaaaaagatcagatctacggctgataaataagtggcgcccaaaggtgtagatccaaggg |
230548 |
T |
 |
| Q |
207 |
ctaggattgtttggcgcctaaaaaagta |
234 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
230547 |
ctaggattgtttggcgcctaaaaaagta |
230520 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 230944 - 230832
Alignment:
| Q |
1 |
tggtaaaacacagatacatggaaaagtataagccaattaaatgtgatgagagaaggtggaaagcaagcacacaatgcattaagtgacacataaggcaagg |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||| ||||||| || |||||||||| |
|
|
| T |
230944 |
tggtaaaacacagatgcatggaaaagtataagtcaatttaatgtgataagggaaggtggaaagcaagcacacaatgcgttaagtg--acctaaggcaagg |
230847 |
T |
 |
| Q |
101 |
agggaaaatttgaaa |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
230846 |
agggaaaatttgaaa |
230832 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 10298 - 10230
Alignment:
| Q |
188 |
aaaggtgtagatctaagggctaggattgtttggcgcctaaaaaagtaaaattagggtttggagtgttaa |
256 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10298 |
aaaggtgtagatccaagggctaggattgtttggcgcctaaaaaagtagaattagggtttggagtgttaa |
10230 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 210 - 279
Target Start/End: Complemental strand, 32684 - 32615
Alignment:
| Q |
210 |
ggattgtttggcgcctaaaaaagtaaaattagggtttggagtgttaactaggattatgaataagttagat |
279 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32684 |
ggattgtttggcgcctaaaaaagtaggattagggtttggagtgttaactaggattagaaataagttagat |
32615 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 44663703 - 44663739
Alignment:
| Q |
245 |
ttggagtgttaactaggattatgaataagttagataa |
281 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44663703 |
ttggagtgttaactaggattaggaataagttagataa |
44663739 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 19962104 - 19962065
Alignment:
| Q |
217 |
ttggcgcctaaaaaagtaaaattagggtttggagtgttaa |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19962104 |
ttggcgcctaaaaaagtaaaattagggttttaagtgttaa |
19962065 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 35349025 - 35348989
Alignment:
| Q |
245 |
ttggagtgttaactaggattatgaataagttagataa |
281 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35349025 |
ttggagtgttaactaggattagaaataagttagataa |
35348989 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 31771393 - 31771429
Alignment:
| Q |
244 |
tttggagtgttaactaggattatgaataagttagata |
280 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31771393 |
tttggagtgttaactaggattaggaataagttagata |
31771429 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 32440669 - 32440703
Alignment:
| Q |
245 |
ttggagtgttaactaggattatgaataagttagat |
279 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32440669 |
ttggagtgttaactaggattaggaataagttagat |
32440703 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 7608405 - 7608441
Alignment:
| Q |
244 |
tttggagtgttaactaggattatgaataagttagata |
280 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
7608405 |
tttggagttttaactaggattaggaataagttagata |
7608441 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 4453812 - 4453778
Alignment:
| Q |
245 |
ttggagtgttaactaggattatgaataagttagat |
279 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4453812 |
ttggagtgttaactaggattaggaataagttagat |
4453778 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 9208604 - 9208570
Alignment:
| Q |
245 |
ttggagtgttaactaggattatgaataagttagat |
279 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9208604 |
ttggagtgttaactaggattaggaataagttagat |
9208570 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 21820194 - 21820230
Alignment:
| Q |
245 |
ttggagtgttaactaggattatgaataagttagataa |
281 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
21820194 |
ttggagtgttaattaggattaggaataagttagataa |
21820230 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University