View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19775_low_4 (Length: 347)

Name: NF19775_low_4
Description: NF19775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19775_low_4
NF19775_low_4
[»] chr6 (3 HSPs)
chr6 (127-279)||(27444127-27444279)
chr6 (1-256)||(33053929-33054182)
chr6 (245-279)||(31444771-31444805)
[»] chr4 (6 HSPs)
chr4 (109-279)||(26720237-26720407)
chr4 (107-234)||(14586727-14586854)
chr4 (1-115)||(14586430-14586542)
chr4 (128-256)||(3649906-3650034)
chr4 (245-279)||(32651290-32651324)
chr4 (245-279)||(38467731-38467765)
[»] scaffold0003 (2 HSPs)
scaffold0003 (127-279)||(43082-43234)
scaffold0003 (127-256)||(36898-37027)
[»] chr3 (7 HSPs)
chr3 (127-253)||(31687908-31688034)
chr3 (127-200)||(31896833-31896906)
chr3 (127-200)||(31912542-31912615)
chr3 (127-200)||(31946190-31946263)
chr3 (210-256)||(19766049-19766095)
chr3 (245-283)||(46233983-46234021)
chr3 (278-312)||(36324260-36324294)
[»] scaffold0005 (2 HSPs)
scaffold0005 (107-234)||(230520-230647)
scaffold0005 (1-115)||(230832-230944)
[»] scaffold0152 (1 HSPs)
scaffold0152 (188-256)||(10230-10298)
[»] scaffold0014 (1 HSPs)
scaffold0014 (210-279)||(32615-32684)
[»] chr8 (3 HSPs)
chr8 (245-281)||(44663703-44663739)
chr8 (217-256)||(19962065-19962104)
chr8 (245-281)||(35348989-35349025)
[»] chr1 (3 HSPs)
chr1 (244-280)||(31771393-31771429)
chr1 (245-279)||(32440669-32440703)
chr1 (244-280)||(7608405-7608441)
[»] chr2 (2 HSPs)
chr2 (245-279)||(4453778-4453812)
chr2 (245-279)||(9208570-9208604)
[»] chr7 (1 HSPs)
chr7 (245-281)||(21820194-21820230)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 127 - 279
Target Start/End: Complemental strand, 27444279 - 27444127
Alignment:
127 attgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatctaagggctaggattgtttggcgccta 226  Q
    ||||||||||||||||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
27444279 attgtgatttgtgccagccagcagcaagatcagatctatggctgataaataagtggcgcccaaaggtgtagatccaagggctaggattgtttggcgccta 27444180  T
227 aaaaagtaaaattagggtttggagtgttaactaggattatgaataagttagat 279  Q
    |||||||| |||||||||||||||||||||||| ||||| |||||||||||||    
27444179 aaaaagtagaattagggtttggagtgttaactacgattaggaataagttagat 27444127  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 33053929 - 33054182
Alignment:
1 tggtaaaacacagatacatggaaaagtataagccaattaaatgtgatgagagaaggtggaaagcaagcacacaatgcattaagtgacacataaggcaagg 100  Q
    ||||| |||||| ||  |||| |||||||||||||||| |||||||| || |||| ||||||| |||||||   ||||||| ||| |   ||||| ||||    
33053929 tggtacaacacatatgtatgggaaagtataagccaatttaatgtgataagggaagttggaaaggaagcacagtctgcattatgtggcg--taaggtaagg 33054026  T
101 agggaaaatttgaaattgaagtgtgcattgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatc 200  Q
    ||||||||||||||| |     |||  ||||||||||||| |||||  |||||||| |||| ||   || |||| ||||||| |||||||| ||| ||||    
33054027 agggaaaatttgaaaattttccgtgtgttgtgatttgtgctagccataagcaagattagatgtagggctcataattaagtggtgcccaaagatgttgatc 33054126  T
201 taagggctaggattgtttggcgcctaaaaaagtaaaattagggtttggagtgttaa 256  Q
     ||||| |||||||| ||||||||||||||||||   |||||||||  ||||||||    
33054127 caagggttaggattgattggcgcctaaaaaagtaggtttagggttttaagtgttaa 33054182  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 31444805 - 31444771
Alignment:
245 ttggagtgttaactaggattatgaataagttagat 279  Q
    ||||||||||||||||||||| |||||||||||||    
31444805 ttggagtgttaactaggattaggaataagttagat 31444771  T

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Target: chr4 (Bit Score: 119; Significance: 9e-61; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 109 - 279
Target Start/End: Complemental strand, 26720407 - 26720237
Alignment:
109 tttgaaattgaagtgtgcattgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatctaagggct 208  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||||| |||| ||   ||||||||||||||| ||||||||||||||||| |||||||    
26720407 tttgaaattgaagtgtgtattgtgatttgtgctagccaacagcaagattagatctatggctgataaataagtggtgcccaaaggtgtagatccaagggct 26720308  T
209 aggattgtttggcgcctaaaaaagtaaaattagggtttggagtgttaactaggattatgaataagttagat 279  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||    
26720307 aggattgtttggcgcctaaaaaagtaggattagggtttggagtgttaactaggattaggaataagttagat 26720237  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 107 - 234
Target Start/End: Original strand, 14586727 - 14586854
Alignment:
107 aatttgaaattgaagtgtgcattgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatctaaggg 206  Q
    ||||||||||||||||||| |||||||||||||| || |||||  |||||||||| |||  ||||||||||||||||||||||||||||||||| |||||    
14586727 aatttgaaattgaagtgtgtattgtgatttgtgctagtcagcaaaaagatcagatctacggctgataaataagtggcgcccaaaggtgtagatccaaggg 14586826  T
207 ctaggattgtttggcgcctaaaaaagta 234  Q
    ||||||||||||||||||||||||||||    
14586827 ctaggattgtttggcgcctaaaaaagta 14586854  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 14586430 - 14586542
Alignment:
1 tggtaaaacacagatacatggaaaagtataagccaattaaatgtgatgagagaaggtggaaagcaagcacacaatgcattaagtgacacataaggcaagg 100  Q
    ||||||||||||||| |||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||| |||||||  || ||||||||||    
14586430 tggtaaaacacagatgcatggaaaagtataagtcaatttaatgtgataagggaaggtggaaagcaagcacacaatgcgttaagtg--acctaaggcaagg 14586527  T
101 agggaaaatttgaaa 115  Q
    |||||||||||||||    
14586528 agggaaaatttgaaa 14586542  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 3650034 - 3649906
Alignment:
128 ttgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatctaagggctaggattgtttggcgcctaa 227  Q
    ||||||||||||| |||||  | ||||||||||| ||    | |||| |||| ||| ||||||| ||| |||| ||||| |||||||| |||||||||||    
3650034 ttgtgatttgtgctagccataaacaagatcagatgtagggttcataattaagcggcacccaaagatgttgatccaagggttaggattgattggcgcctaa 3649935  T
228 aaaagtaaaattagggtttggagtgttaa 256  Q
    ||||||| | |||||||||  ||||||||    
3649934 aaaagtagatttagggttttaagtgttaa 3649906  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 32651290 - 32651324
Alignment:
245 ttggagtgttaactaggattatgaataagttagat 279  Q
    ||||||||||||||||||||| |||||||||||||    
32651290 ttggagtgttaactaggattaggaataagttagat 32651324  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 38467731 - 38467765
Alignment:
245 ttggagtgttaactaggattatgaataagttagat 279  Q
    |||||||||||||||||||||| ||||||||||||    
38467731 ttggagtgttaactaggattataaataagttagat 38467765  T

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Target: scaffold0003 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 127 - 279
Target Start/End: Original strand, 43082 - 43234
Alignment:
127 attgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatctaagggctaggattgtttggcgccta 226  Q
    |||||||||||||| |||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
43082 attgtgatttgtgcaagccagcagcaagatcagatctatggctgataaataagtggcgcccaaaggtgtagatccaagggctaggattgtttggcgccta 43181  T
227 aaaaagtaaaattagggtttggagtgttaactaggattatgaataagttagat 279  Q
    |||||||| |||||||||||||||||||||||| ||||| |||||||||||||    
43182 aaaaagtagaattagggtttggagtgttaactacgattaggaataagttagat 43234  T

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Target: scaffold0003; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 127 - 256
Target Start/End: Original strand, 36898 - 37027
Alignment:
127 attgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatctaagggctaggattgtttggcgccta 226  Q
    |||||||||||||| ||||| |||||||||||||| ||   ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||    
36898 attgtgatttgtgctagccatcagcaagatcagatctatggctgataaataagtggcaaccaaaggtgtagatccaagggctaggattgtttggcgccta 36997  T
227 aaaaagtaaaattagggtttggagtgttaa 256  Q
    |||||| | ||||||| |||| ||||||||    
36998 aaaaagaagaattaggatttgaagtgttaa 37027  T

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Target: chr3 (Bit Score: 99; Significance: 8e-49; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 127 - 253
Target Start/End: Complemental strand, 31688034 - 31687908
Alignment:
127 attgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatctaagggctaggattgtttggcgccta 226  Q
    |||||||||||||| |||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
31688034 attgtgatttgtgctagccagcagcaagatcagatctatggctgataaataagtggcgcccaaaggtgtagatccaagggctaggattgtttggcgccta 31687935  T
227 aaaaagtaaaattagggtttggagtgt 253  Q
    |||||||| ||||||||||||||||||    
31687934 aaaaagtagaattagggtttggagtgt 31687908  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 31896833 - 31896906
Alignment:
127 attgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatc 200  Q
    |||||||||||||| |||||||||||||||||||| ||    ||||||||||||||||||||||||||||||||    
31896833 attgtgatttgtgctagccagcagcaagatcagatctatgggtgataaataagtggcgcccaaaggtgtagatc 31896906  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 31912542 - 31912615
Alignment:
127 attgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatc 200  Q
    |||||||||||||| |||||||||||||||||||| ||    ||||||||||||||||||||||||||||||||    
31912542 attgtgatttgtgctagccagcagcaagatcagatctatgggtgataaataagtggcgcccaaaggtgtagatc 31912615  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 31946190 - 31946263
Alignment:
127 attgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatc 200  Q
    |||||||||||||| |||||||||||||||||||| ||    ||||||||||||||||||||||||||||||||    
31946190 attgtgatttgtgctagccagcagcaagatcagatctatgggtgataaataagtggcgcccaaaggtgtagatc 31946263  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 19766095 - 19766049
Alignment:
210 ggattgtttggcgcctaaaaaagtaaaattagggtttggagtgttaa 256  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||    
19766095 ggattgtttggcgcctaaaaaagtaggattagggtttggagtgttaa 19766049  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 46233983 - 46234021
Alignment:
245 ttggagtgttaactaggattatgaataagttagataact 283  Q
    ||||||||||||||||||||| |||||||||||||||||    
46233983 ttggagtgttaactaggattaggaataagttagataact 46234021  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 312
Target Start/End: Original strand, 36324260 - 36324294
Alignment:
278 ataacttgggataggtaggaatatgcctgtccaaa 312  Q
    ||||| |||||||||||||||||||||||||||||    
36324260 ataacctgggataggtaggaatatgcctgtccaaa 36324294  T

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Target: scaffold0005 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 107 - 234
Target Start/End: Complemental strand, 230647 - 230520
Alignment:
107 aatttgaaattgaagtgtgcattgtgatttgtgccagccagcagcaagatcagatttacaactgataaataagtggcgcccaaaggtgtagatctaaggg 206  Q
    ||||||||||||||||||| |||||||||||||| || |||||  |||||||||| |||  ||||||||||||||||||||||||||||||||| |||||    
230647 aatttgaaattgaagtgtgtattgtgatttgtgctagtcagcaaaaagatcagatctacggctgataaataagtggcgcccaaaggtgtagatccaaggg 230548  T
207 ctaggattgtttggcgcctaaaaaagta 234  Q
    ||||||||||||||||||||||||||||    
230547 ctaggattgtttggcgcctaaaaaagta 230520  T

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Target: scaffold0005; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 230944 - 230832
Alignment:
1 tggtaaaacacagatacatggaaaagtataagccaattaaatgtgatgagagaaggtggaaagcaagcacacaatgcattaagtgacacataaggcaagg 100  Q
    ||||||||||||||| |||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||| |||||||  || ||||||||||    
230944 tggtaaaacacagatgcatggaaaagtataagtcaatttaatgtgataagggaaggtggaaagcaagcacacaatgcgttaagtg--acctaaggcaagg 230847  T
101 agggaaaatttgaaa 115  Q
    |||||||||||||||    
230846 agggaaaatttgaaa 230832  T

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Target: scaffold0152 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 10298 - 10230
Alignment:
188 aaaggtgtagatctaagggctaggattgtttggcgcctaaaaaagtaaaattagggtttggagtgttaa 256  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
10298 aaaggtgtagatccaagggctaggattgtttggcgcctaaaaaagtagaattagggtttggagtgttaa 10230  T

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Target: scaffold0014 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 210 - 279
Target Start/End: Complemental strand, 32684 - 32615
Alignment:
210 ggattgtttggcgcctaaaaaagtaaaattagggtttggagtgttaactaggattatgaataagttagat 279  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||  ||||||||||||    
32684 ggattgtttggcgcctaaaaaagtaggattagggtttggagtgttaactaggattagaaataagttagat 32615  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 44663703 - 44663739
Alignment:
245 ttggagtgttaactaggattatgaataagttagataa 281  Q
    ||||||||||||||||||||| |||||||||||||||    
44663703 ttggagtgttaactaggattaggaataagttagataa 44663739  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 19962104 - 19962065
Alignment:
217 ttggcgcctaaaaaagtaaaattagggtttggagtgttaa 256  Q
    ||||||||||||||||||||||||||||||  ||||||||    
19962104 ttggcgcctaaaaaagtaaaattagggttttaagtgttaa 19962065  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 35349025 - 35348989
Alignment:
245 ttggagtgttaactaggattatgaataagttagataa 281  Q
    |||||||||||||||||||||  ||||||||||||||    
35349025 ttggagtgttaactaggattagaaataagttagataa 35348989  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 31771393 - 31771429
Alignment:
244 tttggagtgttaactaggattatgaataagttagata 280  Q
    |||||||||||||||||||||| ||||||||||||||    
31771393 tttggagtgttaactaggattaggaataagttagata 31771429  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 32440669 - 32440703
Alignment:
245 ttggagtgttaactaggattatgaataagttagat 279  Q
    ||||||||||||||||||||| |||||||||||||    
32440669 ttggagtgttaactaggattaggaataagttagat 32440703  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 7608405 - 7608441
Alignment:
244 tttggagtgttaactaggattatgaataagttagata 280  Q
    |||||||| ||||||||||||| ||||||||||||||    
7608405 tttggagttttaactaggattaggaataagttagata 7608441  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 4453812 - 4453778
Alignment:
245 ttggagtgttaactaggattatgaataagttagat 279  Q
    ||||||||||||||||||||| |||||||||||||    
4453812 ttggagtgttaactaggattaggaataagttagat 4453778  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 9208604 - 9208570
Alignment:
245 ttggagtgttaactaggattatgaataagttagat 279  Q
    ||||||||||||||||||||| |||||||||||||    
9208604 ttggagtgttaactaggattaggaataagttagat 9208570  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 21820194 - 21820230
Alignment:
245 ttggagtgttaactaggattatgaataagttagataa 281  Q
    |||||||||||| |||||||| |||||||||||||||    
21820194 ttggagtgttaattaggattaggaataagttagataa 21820230  T

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