View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19775_low_5 (Length: 326)
Name: NF19775_low_5
Description: NF19775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19775_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 155 - 310
Target Start/End: Complemental strand, 27756841 - 27756686
Alignment:
| Q |
155 |
ttagctaccattgaaccattcagttacaagtgcactaaagattgtgtatacaagggaacaagaacgaagaaaatctgcacaactgagttctttaaatcca |
254 |
Q |
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| T |
27756841 |
ttagctaccattgaaccattcagttacaagtgcactaaagattgtgtatacaagggaacaagaacgaagaaaatctgcacaactgagttctttaaatcca |
27756742 |
T |
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| Q |
255 |
tctgtgctgaaattttgcagaaagaatacctttggatagagtttcagtgttgcttg |
310 |
Q |
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| T |
27756741 |
tctgtgctgaaattttgcagaaagaatacctttgaatagagtttcagtgttgcttg |
27756686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 27761912 - 27761773
Alignment:
| Q |
11 |
caaaggaaaggagcctgatgttgaaggtatacgagggcgaaagtccaaaacagaagtgcaaaaccaaattgtctctaaaaatagtctacccgcgaataca |
110 |
Q |
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| T |
27761912 |
caaaggaaaggagcctgatgctgaaggtatacgagggcgaaagaccaaaacagaagtgcaaaaccaaattgtctctaaaaatagtctacccgcaaataca |
27761813 |
T |
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| Q |
111 |
tctacatcaacgccagctaggatacaagggaaaggagcct |
150 |
Q |
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| T |
27761812 |
tctacatcaacaccagctaggatacaagggaaaggagcct |
27761773 |
T |
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