View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19775_low_7 (Length: 280)
Name: NF19775_low_7
Description: NF19775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19775_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 37634468 - 37634218
Alignment:
| Q |
15 |
acctgtgctaccacctgcacctgccggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttctgctgctagacccaaccct |
114 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37634468 |
acctgtgctaccacctgcacctgtcggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttctgctgcaagacccaaccct |
37634369 |
T |
|
| Q |
115 |
cagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaactccgttatgctattaacg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37634368 |
cagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaactccgttatgctattaacg |
37634269 |
T |
|
| Q |
215 |
gtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacg |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37634268 |
gtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacg |
37634218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 37648583 - 37648333
Alignment:
| Q |
15 |
acctgtgctaccacctgcacctgccggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttctgctgctagacccaaccct |
114 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37648583 |
acctgtgctaccacctgcacctgtcggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttctgctgcaagacccaaccct |
37648484 |
T |
|
| Q |
115 |
cagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaactccgttatgctattaacg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37648483 |
cagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaactccgttatgctattaacg |
37648384 |
T |
|
| Q |
215 |
gtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacg |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37648383 |
gtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacg |
37648333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 37637382 - 37637132
Alignment:
| Q |
15 |
acctgtgctaccacctgcacctgccggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttctgctgctagacccaaccct |
114 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
37637382 |
acctgtgctaccacctgcacctgtcggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttctgctgcaagacccaaccct |
37637283 |
T |
|
| Q |
115 |
cagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaactccgttatgctattaacg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37637282 |
cagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaactctgttatgctattaacg |
37637183 |
T |
|
| Q |
215 |
gtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacg |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37637182 |
gtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacg |
37637132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 37640296 - 37640046
Alignment:
| Q |
15 |
acctgtgctaccacctgcacctgccggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttctgctgctagacccaaccct |
114 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
37640296 |
acctgtgctaccacctgcacctgtcggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttctgctgcaagacccaaccct |
37640197 |
T |
|
| Q |
115 |
cagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaactccgttatgctattaacg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
37640196 |
cagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaactctgttatgctattaacg |
37640097 |
T |
|
| Q |
215 |
gtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacg |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37640096 |
gtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacg |
37640046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 37651495 - 37651245
Alignment:
| Q |
15 |
acctgtgctaccacctgcacctgccggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttctgctgctagacccaaccct |
114 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37651495 |
acctatgctaccacctgcacctgtcggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttctgctgcaagacccaaccct |
37651396 |
T |
|
| Q |
115 |
cagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaactccgttatgctattaacg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37651395 |
cagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaactccgttatgctattaacg |
37651296 |
T |
|
| Q |
215 |
gtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacg |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37651295 |
gtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacg |
37651245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 37645670 - 37645420
Alignment:
| Q |
15 |
acctgtgctaccacctgcacctgccggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttctgctgctagacccaaccct |
114 |
Q |
| |
|
|||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
37645670 |
acctttgctaccatctgcacctgtcggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttctgctgcaagacccaaccct |
37645571 |
T |
|
| Q |
115 |
cagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaactccgttatgctattaacg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37645570 |
cagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaactccgttatgctattaacg |
37645471 |
T |
|
| Q |
215 |
gtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacg |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37645470 |
gtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacg |
37645420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 32387817 - 32387661
Alignment:
| Q |
15 |
acctgtgctaccacctgcacctgccggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttctgctgctagacccaaccct |
114 |
Q |
| |
|
|||||| || ||||||||||| | ||||||||||||||| | |||||| | || || ||||| ||||||||||||||| ||||||||| ||||| ||| |
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|
| T |
32387817 |
acctgttctcccacctgcaccagttggttgggcttggtctttgaaccaggttcgttctttccgctggaacttaaccgctagtgctgctaggcccaatcct |
32387718 |
T |
|
| Q |
115 |
cagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaac |
171 |
Q |
| |
|
|| || |||||||||||||| ||||||||||| ||||| || |||||| | |||||| |
|
|
| T |
32387717 |
caaggttcttaccattacggacagatcaacatcacccgtaccatcaagctcgttaac |
32387661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 43 - 152
Target Start/End: Complemental strand, 32381519 - 32381410
Alignment:
| Q |
43 |
tgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttctgctgctagacccaaccctcagggatcttaccattacggtcagatca |
142 |
Q |
| |
|
||||| |||||| | || |||||||| || |||||||||||||| |||||| ||||||||| |||||||| || || |||||||||||||||||||||| |
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| T |
32381519 |
tgggcatggtctttgaatcagttccgttctttccgttggaacttgaccgctagtgctgctaggcccaacccacaaggttcttaccattacggtcagatca |
32381420 |
T |
|
| Q |
143 |
acattacccg |
152 |
Q |
| |
|
|||| ||||| |
|
|
| T |
32381419 |
acatcacccg |
32381410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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