View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_high_11 (Length: 480)
Name: NF19776_high_11
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 462; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Complemental strand, 3646254 - 3645781
Alignment:
| Q |
1 |
ccctggctttggttcagatcaatttgacgctactgataaagaagagaagaaacatatggttaaatttctcaattggtattacttcatcgtaaacctagga |
100 |
Q |
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| T |
3646254 |
ccctggctttggttcagatcaatttgatgctactgataaagaagagaagaaacatatggttaaatttctcaattggtattacttcatcgtaaacctagga |
3646155 |
T |
|
| Q |
101 |
tctcttatggcagtgacggtccttgtttacatacaagatcatcagggtagagattggggttatggtatatgtgcttgttctattgtgctagcacttgttg |
200 |
Q |
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| T |
3646154 |
tctcttatggcggtgacggtccttgtttacatacaagatcatcagggtagagattggggttatggtatatgtgcttgttctattgtgctagcacttgttg |
3646055 |
T |
|
| Q |
201 |
tgtttttgtttggaacctgtaagtatcggtacaagaaaccggtaggtagtcccttgactcagattgcggtggtgtttgtggccgcttggaggaagaggca |
300 |
Q |
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| T |
3646054 |
tgtttttgtttggaacctgtaagtatcggtacaagaaaccggtaggtagtcccttgactcagattgcggtagtgtttgtggccgcttggaggaagaggca |
3645955 |
T |
|
| Q |
301 |
cttgcaattgccttctgattccgcattgctctttaacgacgatgccatcttacatgaaccaccaaggatcaagaagcagaggttaccgcacagcaaacag |
400 |
Q |
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| T |
3645954 |
cttgcaattgccttctgattccgcattgctctttaacgacgatgccatcttacatgaaccaccaaggatcaagaagcagaggttaccgcacagcaaacag |
3645855 |
T |
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| Q |
401 |
tttcggtaacactttttacccttgtatcttatcgtgtaaatatattttataaagtgtcagaatactatattatt |
474 |
Q |
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| T |
3645854 |
tttcggtaacactttttacccttgtatcttatcgtgtaaatatattttataaagtgtcagaatactatattatt |
3645781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 245 - 409
Target Start/End: Complemental strand, 3658443 - 3658279
Alignment:
| Q |
245 |
ggtagtcccttgactcagattgcggtggtgtttgtggccgcttggaggaagaggcacttgcaattgccttctgattccgcattgctctttaacgacgatg |
344 |
Q |
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|||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||| |||||||||| |||||||| ||||||||| | | || |||| |
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| T |
3658443 |
ggtagtcctttgactcagattgcggtcgtgtttgtggctgcttggaggaagagacacatgcaattgccctctgattcttcattgctctatgaagaggatg |
3658344 |
T |
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| Q |
345 |
ccatcttacatgaaccaccaaggatcaagaagcagaggttaccgcacagcaaacagtttcggtaa |
409 |
Q |
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| T |
3658343 |
atatcctatgtgaaacacctaagaccaagaagcaaaggatgccacatagcaaacagttccggtaa |
3658279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 421
Target Start/End: Complemental strand, 3641718 - 3641607
Alignment:
| Q |
304 |
gcaattgccttctgattccgcattgctctttaacgacgatgccatcttacatgaaccaccaaggatcaagaagcagaggttaccgcacagcaaacagttt |
403 |
Q |
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| T |
3641718 |
gcaactgccctctgattctgcattgctctttaacgacg------tctaagataaaccactaaggatcaaaaagcagaagttactgcacagcaagcagttt |
3641625 |
T |
|
| Q |
404 |
cggtaacactttttaccc |
421 |
Q |
| |
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|||||||| ||||||||| |
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| T |
3641624 |
cggtaacattttttaccc |
3641607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 3658578 - 3658514
Alignment:
| Q |
110 |
gcagtgacggtccttgtttacatacaagatcatcagggtagagattggggttatggtatatgtgc |
174 |
Q |
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| T |
3658578 |
gcagtgactgttcttgtgtacatacaagataaccaaggtagaggttggggttacggtatttgtgc |
3658514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 122 - 298
Target Start/End: Original strand, 41872922 - 41873098
Alignment:
| Q |
122 |
cttgtttacatacaagatcatcagggtagagattggggttatggtatatgtgcttgttctattgtgctagcacttgttgtgtttttgtttggaacctgta |
221 |
Q |
| |
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||||||||||| ||||||||| || ||||||||||||||||| || |||| |||| ||||||| | || ||| |||||| || | |||||| | |
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| T |
41872922 |
cttgtttacattcaagatcatgttggaagagattggggttatggaatgtgtgtttgtgctattgttgttgctctttgtgtgttcttatatggaacaaaga |
41873021 |
T |
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| Q |
222 |
agtatcggtacaagaaaccggtaggtagtcccttgactcagattgcggtggtgtttgtggccgcttggaggaagagg |
298 |
Q |
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| T |
41873022 |
ggtatcggtttaagaaacttgctggtagtcctttgactcagattgcagtggtttatgtggctgcttggaggaagagg |
41873098 |
T |
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