View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_high_12 (Length: 461)
Name: NF19776_high_12
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_high_12 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 25 - 461
Target Start/End: Complemental strand, 37715603 - 37715167
Alignment:
| Q |
25 |
ctagtgataacttacgataaaagctagccattagtaattaatattatcgcgtctaatttgttaattaaggtaccaactatagatatgcagtggcaccatg |
124 |
Q |
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| T |
37715603 |
ctagtgataacttacgataaaagctagccattagtaattaatattatcgcgtctaatttgttaattaaggtaccaactatagatatgcagtggcaccatg |
37715504 |
T |
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| Q |
125 |
aacctgaaacatacattggttactcatgccagcacaagagtaagacagtgcatctccaaataatgtaaagccgtgtcttctgctgcctaatgtgcttcga |
224 |
Q |
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| T |
37715503 |
aacatgaaacatacattggttactcatgccagcacaagagtaagacagtgcatctccaaataatgtaaagccgtgtcttctgctgcctaatgtgcttcga |
37715404 |
T |
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| Q |
225 |
acattttcgccatggtcgaagcttggaagaagaagatcctctcactgatgaaaatgagaatatactacctatacctgccatttgcaagttcaaaatggtt |
324 |
Q |
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| T |
37715403 |
acattttcgccatggtcgaagcttggaagaagaagatcctctcactgatgaaaatgagaatatactacctatacctgccatttgcaagttcaaaatggtt |
37715304 |
T |
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| Q |
325 |
atgatttgcaagttcaaaaatgaaaatatgagtatttgatgtgaatggtactcttaagttgagtatttgttgtgaatggtactctactatatatatgtgt |
424 |
Q |
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| T |
37715303 |
atgatttgcaagttcaaaaatgaaaatatgagtatttgatgtgaatggtactcttaagttgagtatttgttgtgaatggtactctactatatatatgtgt |
37715204 |
T |
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| Q |
425 |
gagtgtggggaataatagggggaagatttgaattgaa |
461 |
Q |
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| T |
37715203 |
gagtgtggggaataatagggggaagatttgaattgaa |
37715167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 99 - 332
Target Start/End: Complemental strand, 37709178 - 37708934
Alignment:
| Q |
99 |
aactatagatatgcagtggcaccatgaacctgaaacatacattggtt----actcatgccagcacaagagtaagacagtgcatctccaaataatgtaaag |
194 |
Q |
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| T |
37709178 |
aactatatatatgcagtggcgccaagaacatgacacatacattgcttgtttactcatgccagcacaagagtaagacagtgcatctccaaataatgtaaag |
37709079 |
T |
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| Q |
195 |
ccgtgtcttctgctgcctaatgtgcttcgaacattttcgccatggtcgaagcttggaagaag------aagatcctctcactgatgaaaatgagaatata |
288 |
Q |
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| T |
37709078 |
ccgtgtcttttgctgccgaatgtgcttcgaacattttcgccatggtcgaagcttggaagaagaagaagaagatcctctcatggatgagaatgagaaaata |
37708979 |
T |
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| Q |
289 |
ctacctatacctgccatttgcaagtt-caaaatggttatgatttg |
332 |
Q |
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| T |
37708978 |
ctacttatacctgccatttgcaagttaaaaaatgtttatgatttg |
37708934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 423
Target Start/End: Complemental strand, 37708905 - 37708861
Alignment:
| Q |
379 |
taagttgagtatttgttgtgaatggtactctactatatatatgtg |
423 |
Q |
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| T |
37708905 |
taagttgagtatttgatgtgaatggtactctcctatatatatgtg |
37708861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 32209281 - 32209342
Alignment:
| Q |
153 |
ccagcacaagagtaagacagtgcatctccaaataatgtaaagccgtgtcttctgctgcctaa |
214 |
Q |
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| T |
32209281 |
ccagcataatagtaaaacagtgcatctccatattatgtaaagccttgccctctgctgcctaa |
32209342 |
T |
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