View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_high_14 (Length: 444)
Name: NF19776_high_14
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 425
Target Start/End: Complemental strand, 10723994 - 10723583
Alignment:
| Q |
14 |
acaaatatataaataaaaactgcaacaattaaaacaattcagtagttgcatatgttcggggttgggtacataattagaagcccaaattcaattcaattct |
113 |
Q |
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| T |
10723994 |
acaaacatataaataaaaaatgcaacaattaaaaaaattcagtagttgcatatgttcggggttgggtacataattagaagtccaaattcaattcaattct |
10723895 |
T |
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| Q |
114 |
agtcctacttggttggttgggtcgggtaccttgttttgcccccttagcctcgtttgcattaattattatctttnnnnnnnntatggcatccttctcaagc |
213 |
Q |
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| T |
10723894 |
agtcctacttggttggttgggtcgggtaccttgttttgcccccttagcctcgtttgcattaattattatctttaaaaaaaatatggcatccttctcaagc |
10723795 |
T |
|
| Q |
214 |
atggactaatttgaggggtctaattccaccgttcaactgaggggagcctcatttaaagccaaaacaaaattttgtatgtactaacccatcaaaattagca |
313 |
Q |
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| T |
10723794 |
acggactaatttgaggggtctaatcccaccgttcaattgaggggagcctcatttaaaggcaaaacaaaattttgtatgtactaacccatcaaaattagca |
10723695 |
T |
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| Q |
314 |
ttgtgggaaatcgagctaaggatatatcttaagaggagtacactccaaggtctcaagctaaaaccatccgaccaactcaaatgacttaaaaccatcatct |
413 |
Q |
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| T |
10723694 |
ttgtgggaaatcgagctaaggatatatcttaagaggagtgcactccaaggtctcaagctaaaaccacccgaccaactcaaatgagttaaaaccatcatct |
10723595 |
T |
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| Q |
414 |
tattgatctaca |
425 |
Q |
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| T |
10723594 |
tattgatctaca |
10723583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 389
Target Start/End: Original strand, 27769374 - 27769424
Alignment:
| Q |
339 |
atcttaagaggagtacactccaaggtctcaagctaaaaccatccgaccaac |
389 |
Q |
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| T |
27769374 |
atcttgagaggagtacacttcaaagtctcaagctgacaccatccgaccaac |
27769424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 46727838 - 46727895
Alignment:
| Q |
259 |
gcctcatttaaagccaaaacaaaattttgtatgtactaacccatcaaaattagcattg |
316 |
Q |
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| T |
46727838 |
gcctcatttaaagccaaaacaaatctttgtaggaactaacccaccaaatttggcattg |
46727895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 10248206 - 10248157
Alignment:
| Q |
263 |
catttaaagccaaaacaaaattttgtatgtactaacccatcaaaattagc |
312 |
Q |
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|||||||||||| ||||| || |||||| |||||||||||||||||||| |
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| T |
10248206 |
catttaaagccataacaaggttatgtatggactaacccatcaaaattagc |
10248157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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