View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_high_18 (Length: 416)
Name: NF19776_high_18
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 154 - 380
Target Start/End: Original strand, 31530431 - 31530658
Alignment:
| Q |
154 |
ttttggccattgaattaggtcataggttgcaacattctctaaagctattcaggttttttccgtggcaaaccaagccaattgataaagtatattaacgagt |
253 |
Q |
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| T |
31530431 |
ttttggccattgaattaggtcataggttgcaacattctctaaagctatacaggttttttcagtggcaaaccaagccgattgataaagtatattaacgagt |
31530530 |
T |
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| Q |
254 |
ccaataataaggtttaacaagacttacaacaatggaaaagaatcggttgaaaatccacgccacacctaactaaaaacatgtatatattact-gagcacta |
352 |
Q |
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| T |
31530531 |
ccaataataaggtttaacaagacttacaacaatggaaaagaatcggttgaaaatccacgccacacctaactaaaaacatgtatatattactggagcacta |
31530630 |
T |
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| Q |
353 |
gccaaatgtaaaggaaaaattgcaaagg |
380 |
Q |
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| T |
31530631 |
gccaaatgtaaaggaaaaattgcaaagg |
31530658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 31523951 - 31524003
Alignment:
| Q |
19 |
atttcaatcaagaattgataggttttgctgagaaattgccatttatagtcatg |
71 |
Q |
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| T |
31523951 |
atttcaatcaatgattgatagcttttgctgagaaattgccatttatagtcatg |
31524003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 31524087 - 31524123
Alignment:
| Q |
74 |
tagagaaatattaaaggagtggaaatgaatatgaaag |
110 |
Q |
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| T |
31524087 |
tagagaaatattaaaggagtggaaatgaatatgaaag |
31524123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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