View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19776_high_20 (Length: 397)

Name: NF19776_high_20
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19776_high_20
NF19776_high_20
[»] chr2 (14 HSPs)
chr2 (39-228)||(10339761-10339953)
chr2 (232-382)||(10339553-10339704)
chr2 (232-382)||(10350498-10350648)
chr2 (274-382)||(10370236-10370341)
chr2 (146-222)||(28898140-28898218)
chr2 (236-302)||(10346087-10346153)
chr2 (146-221)||(42182889-42182966)
chr2 (146-222)||(4964776-4964854)
chr2 (335-382)||(10346029-10346076)
chr2 (146-220)||(37228499-37228576)
chr2 (146-221)||(45554567-45554644)
chr2 (146-206)||(1107055-1107115)
chr2 (146-222)||(11775861-11775937)
chr2 (57-90)||(10346218-10346251)
[»] chr4 (10 HSPs)
chr4 (232-382)||(26573210-26573363)
chr4 (145-220)||(8108957-8109034)
chr4 (49-90)||(26573426-26573467)
chr4 (157-219)||(40812039-40812103)
chr4 (146-206)||(42862524-42862584)
chr4 (156-206)||(39016779-39016829)
chr4 (156-206)||(51206159-51206209)
chr4 (146-206)||(2187916-2187976)
chr4 (149-205)||(20454558-20454614)
chr4 (146-206)||(47237844-47237904)
[»] chr7 (7 HSPs)
chr7 (135-222)||(26703529-26703619)
chr7 (135-222)||(22786150-22786242)
chr7 (157-222)||(19840881-19840948)
chr7 (146-222)||(33008103-33008181)
chr7 (146-204)||(11824090-11824148)
chr7 (146-220)||(13919781-13919857)
chr7 (156-222)||(13919896-13919964)
[»] chr1 (16 HSPs)
chr1 (146-222)||(11135738-11135816)
chr1 (146-222)||(14094104-14094182)
chr1 (146-206)||(32848686-32848746)
chr1 (146-221)||(19101704-19101781)
chr1 (146-221)||(22540368-22540445)
chr1 (146-221)||(41917995-41918072)
chr1 (146-206)||(11430458-11430518)
chr1 (147-220)||(41095713-41095788)
chr1 (146-205)||(15523228-15523287)
chr1 (146-205)||(15531222-15531281)
chr1 (156-206)||(50773125-50773175)
chr1 (168-222)||(11430568-11430624)
chr1 (146-207)||(28109884-28109945)
chr1 (156-222)||(41095605-41095673)
chr1 (168-221)||(21466696-21466751)
chr1 (146-206)||(44739135-44739195)
[»] chr6 (4 HSPs)
chr6 (146-206)||(35128826-35128886)
chr6 (147-222)||(373398-373475)
chr6 (146-206)||(19090318-19090378)
chr6 (168-222)||(19090211-19090267)
[»] chr5 (6 HSPs)
chr5 (146-222)||(42224694-42224772)
chr5 (156-206)||(4959394-4959444)
chr5 (156-206)||(40971467-40971517)
chr5 (146-206)||(40971556-40971616)
chr5 (150-221)||(30325981-30326054)
chr5 (146-221)||(32050413-32050490)
[»] chr3 (5 HSPs)
chr3 (146-222)||(28529252-28529330)
chr3 (146-206)||(37600233-37600293)
chr3 (146-206)||(54140996-54141056)
chr3 (146-205)||(20791314-20791373)
chr3 (146-206)||(46237149-46237209)
[»] chr8 (5 HSPs)
chr8 (146-206)||(35689497-35689557)
chr8 (135-193)||(43026321-43026382)
chr8 (146-221)||(23685131-23685208)
chr8 (146-220)||(32072098-32072174)
chr8 (150-195)||(45246462-45246507)


Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 39 - 228
Target Start/End: Complemental strand, 10339953 - 10339761
Alignment:
39 actgtgataatactttgaattgaattgcaactatgatgggtaatgcttcgttgaggagaatgctagctacacannnnnnngagcactctctctggtaccc 138  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||       ||||||||||| ||||||||    
10339953 actgtgataatactttgagttgaattgcaactatgatgagtaatgcttcgttgaggagaatgctagctacacatttttttgagcactctctgtggtaccc 10339854  T
139 acataaagtgg---gacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaagattgttgctagcattcccctgct 228  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
10339853 acataaagtggtgggacattcattgattttccccaataaaatagtgagtgctagagagagtgttcaaaagattgttgctagcattcccctgct 10339761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 232 - 382
Target Start/End: Complemental strand, 10339704 - 10339553
Alignment:
232 tcttatgcattttctatttgctttatcctttatgggttcccttttgtaaatcatttcaatttttt-gcaaaataactgtcctttcacctatggctgtagt 330  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
10339704 tcttatgcattttctatttgctttagcctttctgggttctcttttgtaaatcatttcaatttttttgcaaaataactgtcctttcacctatggctgtagt 10339605  T
331 atcatttgatgtagcacttacttgcgggtgttgaaactttaaagttaaattt 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
10339604 atcatttgatgtagcacttacttgcgggtgttgaaactttaaagttaaattt 10339553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 232 - 382
Target Start/End: Complemental strand, 10350648 - 10350498
Alignment:
232 tcttatgcattttctatttgctttatcctttatgggttcccttttgtaaatcatttcaattttttgcaaaataactgtcctttcacctatggctgtagta 331  Q
    ||||||||||||||||||||||  | ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||| ||| ||||||| |||||||    
10350648 tcttatgcattttctatttgctgcagcctttctgggttctcttttgtaaatcatttcaattttttgcaaaagaactgtccgttcgcctatggttgtagta 10350549  T
332 tcatttgatgtagcacttacttgcgggtgttgaaactttaaagttaaattt 382  Q
    |||||||||||||||||||||||||||||||||||||| | || |||||||    
10350548 tcatttgatgtagcacttacttgcgggtgttgaaacttcatagataaattt 10350498  T

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Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 274 - 382
Target Start/End: Complemental strand, 10370341 - 10370236
Alignment:
274 tttgtaaatcatttcaattttttgcaaaataactgtcctttcacctatggctgtagtatcatttgatgtagcacttacttgcgggtgttgaaactttaaa 373  Q
    |||||||||||||||| ||||||||| || |||||||||||| ||||||| |||||||| ||||||||||||||||||||   |||||||||| ||||||    
10370341 tttgtaaatcatttcagttttttgcataagaactgtcctttcgcctatggttgtagtat-atttgatgtagcacttactt--aggtgttgaaaatttaaa 10370245  T
374 gttaaattt 382  Q
    |||||||||    
10370244 gttaaattt 10370236  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 28898140 - 28898218
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttc--aaaagattgttgctagcattcc 222  Q
    ||||||||| |||||||||  |||||||||| |||||||||||||||||| | ||  |||||| |||||||||||||||    
28898140 gtgggacatacattgatttcacccaataaaagagtgagtgctagagagagtgctcaaaaaagagtgttgctagcattcc 28898218  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 302
Target Start/End: Complemental strand, 10346153 - 10346087
Alignment:
236 atgcattttctatttgctttatcctttatgggttcccttttgtaaatcatttcaattttttgcaaaa 302  Q
    ||||||||||||||||||| ||| ||| | ||||| ||||||||||| ||||||||||||| |||||    
10346153 atgcattttctatttgcttcatcttttcttggttctcttttgtaaataatttcaattttttacaaaa 10346087  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 42182966 - 42182889
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaa--agattgttgctagcattc 221  Q
    ||||||||| |||||||||  |||||||||| |||||||||||||||||| | |||||  ||| ||||||||||||||    
42182966 gtgggacatacattgatttcacccaataaaagagtgagtgctagagagagtgctcaaaagagagtgttgctagcattc 42182889  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 4964776 - 4964854
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaa--agattgttgctagcattcc 222  Q
    ||||||||| |||||||||  |||||||||| ||||||||||||||||||   |||||  ||| |||||||||||||||    
4964776 gtgggacatacattgatttcacccaataaaaaagtgagtgctagagagagtactcaaaagagaatgttgctagcattcc 4964854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 382
Target Start/End: Complemental strand, 10346076 - 10346029
Alignment:
335 tttgatgtagcacttacttgcgggtgttgaaactttaaagttaaattt 382  Q
    ||||||||||||||| |||||| |||||||||| ||||||||||||||    
10346076 tttgatgtagcactttcttgcgagtgttgaaaccttaaagttaaattt 10346029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 37228576 - 37228499
Alignment:
146 gtgggacattcattgattttc-cccaataaaatagtgagtgctagagagagggttcaaa--agattgttgctagcatt 220  Q
    ||||||||| |||| |||||| |||||||||| |||||||||||||||||| | |||||  ||| |||||||||||||    
37228576 gtgggacatacattaattttcacccaataaaagagtgagtgctagagagagtgctcaaaagagagtgttgctagcatt 37228499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 45554644 - 45554567
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaa--gattgttgctagcattc 221  Q
    ||||||||| |||||||||   ||||||||| |||||||||||||||||| ||| ||||  || ||||||||||||||    
45554644 gtgggacatacattgatttcatccaataaaagagtgagtgctagagagagtgttgaaaagtgagtgttgctagcattc 45554567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 1107115 - 1107055
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaaga 206  Q
    ||||||||| |||||||||  |||||||||| |||| ||||||||||||| | ||||||||    
1107115 gtgggacatacattgatttcacccaataaaagagtgggtgctagagagagtgctcaaaaga 1107055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 11775861 - 11775937
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaagattgttgctagcattcc 222  Q
    |||| |||||||||||||||  ||||||||| | | |||| ||||||||| ||  |||||| |||||||||||||||    
11775861 gtggcacattcattgattttatccaataaaacaataagtgttagagagagtgtataaaagagtgttgctagcattcc 11775937  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 10346251 - 10346218
Alignment:
57 attgaattgcaactatgatgggtaatgcttcgtt 90  Q
    |||||||||||||| |||||||||||||||||||    
10346251 attgaattgcaactgtgatgggtaatgcttcgtt 10346218  T

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Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 232 - 382
Target Start/End: Complemental strand, 26573363 - 26573210
Alignment:
232 tcttatgcattttctatttgctttatcctttatgggttcccttttgtaaatcatttcaatttttt--gcaaaataactgtcctttcacctatggctgtag 329  Q
    ||||||||||||||||| ||||||| ||||| || |||| |||||||||||||||||| ||||||  |||||| |||||||||||| ||||||| |||||    
26573363 tcttatgcattttctatctgctttagcctttctgtgttctcttttgtaaatcatttcatttttttttgcaaaagaactgtcctttcgcctatggttgtag 26573264  T
330 tatc-atttgatgtagcacttacttgcgggtgttgaaactttaaagttaaattt 382  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||| ||||    
26573263 tatcgatttgatgtagcacttacttgcgggtgttgaaacttcaaagttatattt 26573210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 8109034 - 8108957
Alignment:
145 agtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaa--gattgttgctagcatt 220  Q
    |||||||||| |||||||||  |||||||||| |||||||||||||||||| ||| ||||  || |||||||||||||    
8109034 agtgggacatacattgatttcacccaataaaagagtgagtgctagagagagtgttgaaaagtgagtgttgctagcatt 8108957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 26573467 - 26573426
Alignment:
49 tactttgaattgaattgcaactatgatgggtaatgcttcgtt 90  Q
    |||||||| ||||||||||||| |||||||||||||||||||    
26573467 tactttgagttgaattgcaactgtgatgggtaatgcttcgtt 26573426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 40812103 - 40812039
Alignment:
157 attgattttccccaataaaatagtgagtgctagagagagggttc--aaaagattgttgctagcat 219  Q
    ||||||||  |||||||||| |||||||||||||||||| ||||  |||||| ||||||||||||    
40812103 attgatttcacccaataaaagagtgagtgctagagagagtgttcaaaaaagagtgttgctagcat 40812039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 42862524 - 42862584
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaaga 206  Q
    ||||||||| |||||||||  |||||||||| ||||||||||||||| || | ||||||||    
42862524 gtgggacatacattgatttcacccaataaaaaagtgagtgctagagaaagtgctcaaaaga 42862584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 39016779 - 39016829
Alignment:
156 cattgattttccccaataaaatagtgagtgctagagagagggttcaaaaga 206  Q
    |||||||||| || ||||||| ||| |||||||||||||| ||||||||||    
39016779 cattgattttacctaataaaagagtaagtgctagagagagtgttcaaaaga 39016829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 51206159 - 51206209
Alignment:
156 cattgattttccccaataaaatagtgagtgctagagagagggttcaaaaga 206  Q
    |||||||||  |||||||||| |||||||||||||||||| | ||||||||    
51206159 cattgatttcacccaataaaagagtgagtgctagagagagtgctcaaaaga 51206209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 2187916 - 2187976
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaaga 206  Q
    |||||||||||||||||||  |||||||||| || ||  ||||||||||| | ||||||||    
2187916 gtgggacattcattgatttcacccaataaaagagcgaaagctagagagagtgctcaaaaga 2187976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 20454614 - 20454558
Alignment:
149 ggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaag 205  Q
    |||||| ||||||||||  | ||||||| |||||||||||||||||| ||| |||||    
20454614 ggacatacattgattttatctaataaaagagtgagtgctagagagagtgttgaaaag 20454558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 47237844 - 47237904
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaaga 206  Q
    |||||||||  ||||||||   ||||||||| ||||| |||||||||||| ||||||||||    
47237844 gtgggacatatattgatttcatccaataaaagagtgaatgctagagagagtgttcaaaaga 47237904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 26703529 - 26703619
Alignment:
135 acccacataaagtgg---gacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaagattgttgctagcattcc 222  Q
    |||||||||||||||   ||||| |||||||||  |||||||||| |||||||||||||||||  | |||||||| |||||||||||||||    
26703529 acccacataaagtggtgagacatacattgatttcacccaataaaagagtgagtgctagagagaatgctcaaaagagtgttgctagcattcc 26703619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 22786242 - 22786150
Alignment:
135 acccacataaagtgg---gacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaa--agattgttgctagcattcc 222  Q
    |||||||||||||||   ||||| |||||||||  || ||||||| |||||||||||||||||| | |||||  ||| |||||||||||||||    
22786242 acccacataaagtggtgagacatacattgatttcacctaataaaaaagtgagtgctagagagagtgctcaaaagagagtgttgctagcattcc 22786150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 19840948 - 19840881
Alignment:
157 attgattttccccaataaaatagtgagtgctagagagagggttcaaa--agattgttgctagcattcc 222  Q
    ||||||||  |||||||||| |||||||||||||||||| | |||||  ||| |||||||||||||||    
19840948 attgatttcacccaataaaagagtgagtgctagagagagtgctcaaaatagagtgttgctagcattcc 19840881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 33008181 - 33008103
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaa--gattgttgctagcattcc 222  Q
    ||||||||| || ||||||   ||||||||| ||||||||||||||| || ||||||||  || |||||||||||||||    
33008181 gtgggacatacaatgatttcatccaataaaagagtgagtgctagagatagtgttcaaaagtgagtgttgctagcattcc 33008103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 11824148 - 11824090
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaa 204  Q
    ||||||||| |||||||||   ||||||||| |||||||||||||||||| ||| ||||    
11824148 gtgggacatacattgatttcatccaataaaagagtgagtgctagagagagcgttgaaaa 11824090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 13919857 - 13919781
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaa--agattgttgctagcatt 220  Q
    ||||||||| |||||||||  |||||||||  || ||||||||||||||| | |||||  ||| |||||||||||||    
13919857 gtgggacatacattgatttcacccaataaatgagcgagtgctagagagagtgctcaaaagagagtgttgctagcatt 13919781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 13919896 - 13919964
Alignment:
156 cattgattttccccaataaaatagtgagtgctagagagagggttcaaa--agattgttgctagcattcc 222  Q
    |||||||||  |||||||||  |||||||||||||||||| | |||||  ||| |||||||||||||||    
13919896 cattgatttcacccaataaatgagtgagtgctagagagagtgctcaaaagagagtgttgctagcattcc 13919964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 11135816 - 11135738
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaa--agattgttgctagcattcc 222  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||||| | |||||  ||| |||||||||||||||    
11135816 gtgggacatacattgatttcacccaataaaatagtgagtgctagagagagtgctcaaaagagagtgttgctagcattcc 11135738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 14094104 - 14094182
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaagat--tgttgctagcattcc 222  Q
    ||||||||| |||||||||  |||||||||| |||||||||| ||||||| |||||||||||  ||| |||||||||||    
14094104 gtgggacatacattgatttcacccaataaaaaagtgagtgctggagagagtgttcaaaagataatgtcgctagcattcc 14094182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 32848686 - 32848746
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaaga 206  Q
    ||||||||| || ||||||  |||||||||| |||||||||||||||||| ||||||||||    
32848686 gtgggacatacaatgatttcacccaataaaagagtgagtgctagagagagtgttcaaaaga 32848746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 19101704 - 19101781
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaa--gattgttgctagcattc 221  Q
    ||||||||| |||||||||   ||||||||||||||||||||| |||||| || |||||  || ||||||||||||||    
19101704 gtgggacatacattgatttcatccaataaaatagtgagtgctaaagagagtgtgcaaaagtgaatgttgctagcattc 19101781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 22540445 - 22540368
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaa--gattgttgctagcattc 221  Q
    ||||||||| |||||||||   ||||||||||||||||||||| |||||| || |||||  || ||||||||||||||    
22540445 gtgggacatacattgatttcatccaataaaatagtgagtgctaaagagagtgtgcaaaagtgaatgttgctagcattc 22540368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 41918072 - 41917995
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaa--agattgttgctagcattc 221  Q
    ||||||||| |||||||||  |||||||||| |||||||||||||||| | | |||||  ||| ||||||||||||||    
41918072 gtgggacatacattgatttcacccaataaaagagtgagtgctagagagggtgctcaaaagagagtgttgctagcattc 41917995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 11430518 - 11430458
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaaga 206  Q
    ||||||||| |||||||||  |||||||||| ||||||||||||| |||| | ||||||||    
11430518 gtgggacatacattgatttcacccaataaaagagtgagtgctagaaagagtgctcaaaaga 11430458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 41095713 - 41095788
Alignment:
147 tgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaa--agattgttgctagcatt 220  Q
    |||||||| |||||||||  |||||||||  |||||||||||||||||| | |||||  ||| |||||||||||||    
41095713 tgggacatacattgatttcacccaataaatgagtgagtgctagagagagtgctcaaaagagagtgttgctagcatt 41095788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 15523287 - 15523228
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaag 205  Q
    ||||||||| |||||||||   ||||||||||||||||||||| |||||| || ||||||    
15523287 gtgggacatacattgatttcatccaataaaatagtgagtgctaaagagagtgtgcaaaag 15523228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 15531281 - 15531222
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaag 205  Q
    ||||||||| |||||||||   ||||||||||||||||||||| |||||| || ||||||    
15531281 gtgggacatacattgatttcatccaataaaatagtgagtgctaaagagagtgtgcaaaag 15531222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 50773175 - 50773125
Alignment:
156 cattgattttccccaataaaatagtgagtgctagagagagggttcaaaaga 206  Q
    |||| ||||| |||||||||| | |||||||||||||||| ||||||||||    
50773175 cattaattttacccaataaaagaatgagtgctagagagagtgttcaaaaga 50773125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 11430568 - 11430624
Alignment:
168 ccaataaaatagtgagtgctagagagagggttcaaa--agattgttgctagcattcc 222  Q
    ||||||||| |||||||||||||||||| | |||||  ||| |||||||||||||||    
11430568 ccaataaaagagtgagtgctagagagagtgctcaaaagagagtgttgctagcattcc 11430624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 28109945 - 28109884
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaagat 207  Q
    |||| |||| |||||||||  |||||||||| ||||||||||||||| || | |||||||||    
28109945 gtggaacatgcattgatttcacccaataaaaaagtgagtgctagagaaagtgctcaaaagat 28109884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 41095673 - 41095605
Alignment:
156 cattgattttccccaataaaatagtgagtgctagagagagggttcaaa--agattgttgctagcattcc 222  Q
    |||||||||  |||||||||  |||||||||||||||||| | |||||  ||| |||||||||||||||    
41095673 cattgatttcacccaataaataagtgagtgctagagagagtgctcaaaagagagtgttgctagcattcc 41095605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 21466696 - 21466751
Alignment:
168 ccaataaaatagtgagtgctagagagagggttcaaaa--gattgttgctagcattc 221  Q
    ||||||||||||||||||||| |||||| || |||||  || ||||||||||||||    
21466696 ccaataaaatagtgagtgctaaagagagtgtgcaaaagtgaatgttgctagcattc 21466751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 44739195 - 44739135
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaaga 206  Q
    ||||||||| |||| ||||  | ||| |||| |||||||||||||||||| ||||||||||    
44739195 gtgggacatacattaatttcactcaagaaaagagtgagtgctagagagagtgttcaaaaga 44739135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 35128826 - 35128886
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaaga 206  Q
    ||||||||| |||||||||| |||||||||| ||||| |||||||||||| ||||||||||    
35128826 gtgggacatacattgattttacccaataaaagagtgactgctagagagagtgttcaaaaga 35128886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 373475 - 373398
Alignment:
147 tgggacattcattgattttccccaataaaatagtgagtgctagagagagggttc--aaaagattgttgctagcattcc 222  Q
    |||||||| |||||||||| |||||||||| |||| ||||||||||||| | ||  |||||| ||||| |||||||||    
373475 tgggacatacattgattttacccaataaaaaagtgggtgctagagagagtgctcaaaaaagaatgttgttagcattcc 373398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 19090318 - 19090378
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaaga 206  Q
    ||||||||| |||||||||  |||||||||| |||| ||||||||||||| | ||||||||    
19090318 gtgggacatacattgatttcacccaataaaagagtgggtgctagagagagtgctcaaaaga 19090378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 19090267 - 19090211
Alignment:
168 ccaataaaatagtgagtgctagagagagggttcaaa--agattgttgctagcattcc 222  Q
    ||||||||| |||||||||||||||||| | |||||  ||| |||||||||||||||    
19090267 ccaataaaagagtgagtgctagagagagtgctcaaaagagagtgttgctagcattcc 19090211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 42224694 - 42224772
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaa--agattgttgctagcattcc 222  Q
    ||||||||| |||||||||  || ||||||| |||||||||||||||||| | |||||  ||| |||||||||||||||    
42224694 gtgggacatacattgatttcacctaataaaagagtgagtgctagagagagtgctcaaaagagagtgttgctagcattcc 42224772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 4959394 - 4959444
Alignment:
156 cattgattttccccaataaaatagtgagtgctagagagagggttcaaaaga 206  Q
    ||||||||| ||||||||||| |||||||||||||||||| | ||||||||    
4959394 cattgatttcccccaataaaagagtgagtgctagagagagtgctcaaaaga 4959444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 40971517 - 40971467
Alignment:
156 cattgattttccccaataaaatagtgagtgctagagagagggttcaaaaga 206  Q
    |||||||||| ||||||||||||||||||| |||| |||| ||||||||||    
40971517 cattgattttacccaataaaatagtgagtgttagatagagtgttcaaaaga 40971467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 40971556 - 40971616
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaaga 206  Q
    ||||||||| |||||||||  | |||||||| |||||||||||||||||| | ||||||||    
40971556 gtgggacatacattgatttcactcaataaaagagtgagtgctagagagagtgctcaaaaga 40971616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 30325981 - 30326054
Alignment:
150 gacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaa--gattgttgctagcattc 221  Q
    ||||| |||||||||   ||||||||||||||||||||| |||||| || |||||  || ||||||||||||||    
30325981 gacatacattgatttcatccaataaaatagtgagtgctaaagagagtgtgcaaaagtgaatgttgctagcattc 30326054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 32050413 - 32050490
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaa--agattgttgctagcattc 221  Q
    |||| |||| |||||||||  |||||||||| |||||||||||||||||  | |||||  ||| ||||||||||||||    
32050413 gtggaacatacattgatttcacccaataaaaaagtgagtgctagagagaatgctcaaaagagagtgttgctagcattc 32050490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 28529330 - 28529252
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaa--gattgttgctagcattcc 222  Q
    ||||||||| |||||||||   ||||||||| |||||||||||||||||| ||| ||||  || |||||||||||||||    
28529330 gtgggacatacattgatttcatccaataaaagagtgagtgctagagagagtgttgaaaagtgagtgttgctagcattcc 28529252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 37600233 - 37600293
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaaga 206  Q
    ||||||||| |||||||||  |||||||||| |||| ||||||||||||| | ||||||||    
37600233 gtgggacatacattgatttcacccaataaaagagtgggtgctagagagagtgctcaaaaga 37600293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 54140996 - 54141056
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaaga 206  Q
    ||||||||| |||||||||  |||||||||  |||||||||||||||||| | ||||||||    
54140996 gtgggacatacattgatttcacccaataaatgagtgagtgctagagagagtgctcaaaaga 54141056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 20791373 - 20791314
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaag 205  Q
    ||||||||| |||||||||   ||||||||||||||||||||| |||||| || ||||||    
20791373 gtgggacatacattgatttcatccaataaaatagtgagtgctaaagagagtgtgcaaaag 20791314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 46237149 - 46237209
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaaga 206  Q
    ||||||||| |||||||||   ||||||||| ||||| |||||||||||| | ||||||||    
46237149 gtgggacatacattgatttcatccaataaaagagtgattgctagagagagtgctcaaaaga 46237209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 35689557 - 35689497
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaaga 206  Q
    ||||||||| |||||||||   ||||||||| |||||||||||||||||| | ||||||||    
35689557 gtgggacatacattgatttcatccaataaaaaagtgagtgctagagagagtgctcaaaaga 35689497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 43026382 - 43026321
Alignment:
135 acccacataaagtgg---gacattcattgattttccccaataaaatagtgagtgctagagag 193  Q
    |||||||||||||||   ||||| |||||||||| || ||||||| ||||||||||||||||    
43026382 acccacataaagtggcaggacatacattgattttacctaataaaaaagtgagtgctagagag 43026321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 23685208 - 23685131
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaa--gattgttgctagcattc 221  Q
    ||||||||| |||||||||   ||||||||||||||||||||  |||||| || |||||  || ||||||||||||||    
23685208 gtgggacatacattgatttcatccaataaaatagtgagtgcttaagagagtgtgcaaaagtgaatgttgctagcattc 23685131  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 32072174 - 32072098
Alignment:
146 gtgggacattcattgattttccccaataaaatagtgagtgctagagagagggttcaaaa--gattgttgctagcatt 220  Q
    ||||||||| |||| ||||   ||||||||| |||||||||||||||||| ||| ||||  || |||||||||||||    
32072174 gtgggacatacattcatttcatccaataaaagagtgagtgctagagagagtgttgaaaagtgaatgttgctagcatt 32072098  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 45246507 - 45246462
Alignment:
150 gacattcattgattttccccaataaaatagtgagtgctagagagag 195  Q
    ||||| ||||||||||  ||||||||||||||||||||| ||||||    
45246507 gacatacattgattttatccaataaaatagtgagtgctaaagagag 45246462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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