View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_high_3 (Length: 712)
Name: NF19776_high_3
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 540; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 16 - 702
Target Start/End: Original strand, 35262638 - 35263324
Alignment:
| Q |
16 |
aaaacaacaaccaattttacaatagactcgctttgtttttgttgtgactttgactgtggacggttagatgctttctgaacaacaattataattttatcat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35262638 |
aaaacaacaaccaattttacaatagactcgctttgtttttgttgtgattttgtttgtggacggttaggtgctttctgaacaacaattataattttatcat |
35262737 |
T |
|
| Q |
116 |
tgatactccttgtgtcttaggtagnnnnnnnnnnnnnaatcatcatatatatgaaaagccacgcacaagaagtactaaaatggcaagctcttacaatnnn |
215 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||| | |
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| T |
35262738 |
tgatactccttgtgtcttaggta-atttttttttttaaatcagcatatatatgaaaagccacgcacaagaagtgctaaaatggcaagctgttacattcaa |
35262836 |
T |
|
| Q |
216 |
nnnnttcacccgtcataggtagtttttatttacactttccatcataactttacataaaaacgtgtttggacgaatgtagtactgatctattgaaaaatca |
315 |
Q |
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| T |
35262837 |
aaaattcacccatcttagatagtttttatttacacttttcatcataactttacagcaaaacgtgtttggacgaatgtagtactgatctattgaaaaatca |
35262936 |
T |
|
| Q |
316 |
ttaccaacttagtagaataagatttgatcgttattatcttaaaaatatttgctgatattcttttattcgatttgagtagttcttttctttcttatccacc |
415 |
Q |
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||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35262937 |
ttatcaactcagtagaataagatttgattgttattatcttaaaaatatttgctgatattcttttattcgatttgagtagttcttttctttcttatccacc |
35263036 |
T |
|
| Q |
416 |
gaaatgaaacatattgaacatgaacatcgtccttgagtagctgtctttattccttagtaagtgtactagtagcttacaatacaaacaatagactacactg |
515 |
Q |
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| T |
35263037 |
gaaatgaaacatattgaacatgaacatcgtccttgagtagctgtctttattccttagtaagtgtactagtagcttacaatacaaacaatagactacactg |
35263136 |
T |
|
| Q |
516 |
caataccacgagcttgtctttgtctgtattagacacaatttatatacattgcattaaagttaaaatactttatactatataattatacacattttatttg |
615 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35263137 |
caataccacgagcttgtcttcgtctgtattagacacaatttatatacattgcattaaagttaaaatactttatactatataattatacacattttatttg |
35263236 |
T |
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| Q |
616 |
tgatgtagtacgtactcataacacatgggtatggtatgagaattggagcctaccaaaact-aacattcctacactacacatatttcat |
702 |
Q |
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| T |
35263237 |
tgatgtagtacgtactcataacacatgggtatggtatgagaattggagcctaccaaaactaaacattcctacactacacatatttcat |
35263324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 54353685 - 54353734
Alignment:
| Q |
163 |
tatatgaaaagccacgcacaagaagtact-aaaatggcaagctcttacaa |
211 |
Q |
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|||| |||||||||||||||||||||||| |||||||| |||| |||||| |
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| T |
54353685 |
tataagaaaagccacgcacaagaagtactaaaaatggctagctgttacaa |
54353734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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