View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19776_high_34 (Length: 321)

Name: NF19776_high_34
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19776_high_34
NF19776_high_34
[»] chr1 (1 HSPs)
chr1 (9-302)||(47338619-47338907)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 302
Target Start/End: Original strand, 47338619 - 47338907
Alignment:
Q  9 gaagaaaatg-taaaagaattgaggacaaggcttttgccaccgcaaacctacattacgagaaagagccagatggtgatggaggttctgcagtccagcttt 107  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47338619 gaagaaaatgctaaaagaattgaggacaaggcttttgccacggcaaacctacattacgagaaagagccagatggtgatggaggttctgcagtccagcttt 47338718  T
Q  108 atgccaaagaatgcagtaagctcctcctagaactttttaaaatgggtcctagtaagaacagtgtcaaagaagcggtgatttctgannnnnnnnnnnnnnn 207  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||                   
T  47338719 atgccaaagaatgcagtaagctcctcctagaacttcttaaaatgggtcctagtaagaacagtgtcaaagaagcggtgatttctga------tgctgctgc 47338812  T
Q  208 nntccctcgtgaatttgtttttgatatatctaaaggccaaagggctttcattgaagcagaggaggctcatgaacttttgagtccactgaaggagc 302  Q
      |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  47338813 tgtccctcgtgaatctgtttttgatatatctaaaggccaaagggctttcattgaagcagaggaggctcaagaacttttgagtccactgaaggagc 47338907  T

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