View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_high_36 (Length: 315)
Name: NF19776_high_36
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_high_36 |
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| [»] scaffold0685 (1 HSPs) |
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Alignment Details
Target: scaffold0685 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 6304 - 6007
Alignment:
| Q |
1 |
cgatcctagaaatgatgatataacataatatgatcatagaaacattaattgtaattgcaaagcaaagtgaggtgtaaaaagcgaatttgagacggcttgg |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6304 |
cgatcctagaaatgatgatataatataatatgatcatagaaacattaattgtaattgcaaagcaaagtgaggtgtaaaaagcgaatttgagacggctaag |
6205 |
T |
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| Q |
101 |
tttgacacagacacaccgtacctagctttatttcacattgataaataactcatccttatgcagagtttctgaaaccaaaacgtgattacaaatcatcaan |
200 |
Q |
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| T |
6204 |
tttgacacagacacaccgtacctagccttatttcacattgataaataactcatccttatgcagagtttctgaaaccaaaacgtgattacaaatcatcaat |
6105 |
T |
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| Q |
201 |
nnnnnncatcaacagatatcacaaattagaagttagcaaactttttatctttgaaactttctacaatctctttgaggctcacttccaggggaataaat |
298 |
Q |
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| T |
6104 |
ttttttcatcaacgtatatcacaaattagaagttagcaaactttttatctttgaaactttctacgatctctctaaggctcacttccaggggaataaat |
6007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 29550631 - 29550334
Alignment:
| Q |
1 |
cgatcctagaaatgatgatataacataatatgatcatagaaacattaattgtaattgcaaagcaaagtgaggtgtaaaaagcgaatttgagacggcttgg |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29550631 |
cgatcctagaaatgatgatataatataatatgatcatagaaacattaattgtaattgcaaagcaaagtgaggtgtaaaaagcgaatttgagacggctaag |
29550532 |
T |
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| Q |
101 |
tttgacacagacacaccgtacctagctttatttcacattgataaataactcatccttatgcagagtttctgaaaccaaaacgtgattacaaatcatcaan |
200 |
Q |
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| T |
29550531 |
tttgacacagacacaccgtacctagccttatttcacattgataaataactcatccttatgcagagtttctgaaaccaaaacgtgattacaaatcatcaat |
29550432 |
T |
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| Q |
201 |
nnnnnncatcaacagatatcacaaattagaagttagcaaactttttatctttgaaactttctacaatctctttgaggctcacttccaggggaataaat |
298 |
Q |
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| T |
29550431 |
ttttttcatcaacgtatatcacaaattagaagttagcaaactttttatctttgaaactttctacgatctctctaaggctcacttccaggggaataaat |
29550334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 298
Target Start/End: Complemental strand, 29556873 - 29556791
Alignment:
| Q |
216 |
atatcacaaattagaagttagcaaactttttatctttgaaactttctacaatctctttgaggctcacttccaggggaataaat |
298 |
Q |
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| T |
29556873 |
atatcacaatttagaagttagcaaattctttttctttgaaactttctacgatctctctaaggctcacttcaaggggaataaat |
29556791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 29560827 - 29560767
Alignment:
| Q |
128 |
ttatttcacattgataaataactcatccttatgcagagtttctgaaaccaaaacgtgatta |
188 |
Q |
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| T |
29560827 |
ttatttcacattaataaataactcatccttctgcagagtttctgaaaccaaaacatgatta |
29560767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 29560729 - 29560666
Alignment:
| Q |
234 |
tagcaaactttttatctttgaaactttctacaatctctttgaggctcacttccaggggaataaa |
297 |
Q |
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| T |
29560729 |
tagcaaactttttttctttgaaactttctatgatctctttgaggctcatttccaggggaataaa |
29560666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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