View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19776_high_37 (Length: 313)

Name: NF19776_high_37
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19776_high_37
NF19776_high_37
[»] chr7 (3 HSPs)
chr7 (160-304)||(26880547-26880691)
chr7 (19-112)||(26880453-26880546)
chr7 (47-96)||(40250196-40250245)
[»] chr2 (1 HSPs)
chr2 (47-108)||(40707441-40707502)


Alignment Details
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 160 - 304
Target Start/End: Original strand, 26880547 - 26880691
Alignment:
Q  160 cattactggtatcatcaaaatacaaaactttcatcagtgaaaattaaatgcttcggaaaaaacttgccctaaaaacacaacaccgcaagcaacaagacat 259  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26880547 cattactgttatcatcaaaatacaaaacttttatcagtgaaaattaaatgcttcggaaaaaacttgccctaaaaacacaacaccgcaagcaacaagacat 26880646  T
Q  260 aaaaattaagatggtaagagtttatggaaatgaacatacctatgc 304  Q
     ||||||||||||||||||||||||||||||||||||||||||||    
T  26880647 gaaaattaagatggtaagagtttatggaaatgaacatacctatgc 26880691  T

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Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 26880453 - 26880546
Alignment:
Q  19 aaaaaggcacaaaggaaacaccatgctgatggtgaaactacaaagtatgaaaatacaatgtaagacgaaatttcaagagtatctataatgactg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26880453 aaaaaggcacaaaggaaacaccatgctgatggtgaaactacaaagtatgaaaatacaatgtaagacgaaatttcaagagtatctataatgactg 26880546  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 40250196 - 40250245
Alignment:
Q  47 atggtgaaactacaaagtatgaaaatacaatgtaagacgaaatttcaaga 96  Q
    ||||||||||| |||| |||||||||| ||||||||||||||||||||||    
T  40250196 atggtgaaactgcaaaatatgaaaatataatgtaagacgaaatttcaaga 40250245  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 40707441 - 40707502
Alignment:
Q  47 atggtgaaactacaaagtatgaaaatacaatgtaagacgaaatttcaagagtatctataatg 108  Q
    ||||||||||||||||||||||||||| ||||||||||  ||||| |||| |||||||||||    
T  40707441 atggtgaaactacaaagtatgaaaatataatgtaagacagaattttaagaatatctataatg 40707502  T

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