View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_high_38 (Length: 308)
Name: NF19776_high_38
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 41217861 - 41217579
Alignment:
| Q |
16 |
aaatctttggcttaaaatgatgactgagagcacacaacaaactcaaagtgtggagtagaggactaaaatccttcatgaattcacacaagtgcacatgcaa |
115 |
Q |
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| T |
41217861 |
aaatctttggcttaaaatgatgactgagagcacacaacaaactcaaagtgtggagtagaggactaaaatccttcatgaattcacacaagtacacatgcaa |
41217762 |
T |
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| Q |
116 |
tctctccttttagccaagcacatttctgatataaaaatatttctccttccaatagtgtgttgaattcgtgactcatcaatactacatggattatgaatga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41217761 |
tctctccttttagccaagcacatttctgatataaaaatatttctccttgcaatagtgtgttgaattcgtgactcatcaatactacatggattatgaatca |
41217662 |
T |
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| Q |
216 |
gataaatgttagatataataaagaagtaatttgtatatgacgttttacgatttttagtgaagatttgatgttttggtcctttg |
298 |
Q |
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|||||||||| |||| ||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||| |
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| T |
41217661 |
gataaatgttggatacaataaagaaataatttgtatatgacgctttacgatttttagtgaagatatgatgttttggtcttttg |
41217579 |
T |
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