View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19776_high_4 (Length: 701)
Name: NF19776_high_4
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 16 - 691
Target Start/End: Complemental strand, 40088131 - 40087436
Alignment:
| Q |
16 |
actggtttgctcataacatattatttgctataatttaaccttacaatatcattcatttgaatgtgtctggtgattgactgtagttttccaatt------- |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40088131 |
actggtttgctcataacatattatttgctataatttaaccttacaatatcattcatttgaatgtgtctggtgattcactgtagttttccaatttagtggt |
40088032 |
T |
|
| Q |
109 |
-------------caataatgtattcagatcattgtgtgtgtttccttactatctttcttctgttgtaannnnnnngtttcgcagataaagttaaatcat |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
40088031 |
taaatttcatattcaataatgtattcagatcattgtgtgtgtttccttactatctttcttctgttgtaatttttttgtttcgcagataaagttaaatcat |
40087932 |
T |
|
| Q |
196 |
agaaagttactggatggcatgatgcaaatatgtggagtacctcctgaaaagtttagaactatatgttcaagtattgacaagttagacaaacattcattcg |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40087931 |
agaaagttactggatggcatgatgcaaatatgtggagtacctcctgcaaagtttagaactatatgttcaagtattgacaagttagacaaacattcattcg |
40087832 |
T |
|
| Q |
296 |
aacagataagcaaataaatggttagggcatatgttgtttgtttctagtatttcctttataataatttttattatgattgagcggaccaattttgttgtgc |
395 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40087831 |
aacagataagaaaataaatggttagggcatatgttgtttgtttctagtatttcctttataataatttttattatgattgagcggaccaattttgttgtgc |
40087732 |
T |
|
| Q |
396 |
ttaaactgttcttgacttgcacgttttgaatttattttatatttattttctaaatactcatagtttatgcttatcaatgagaaatagtttggtttagcca |
495 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40087731 |
tttaactgttcttggcttgcacgttttgaatttattttatatttattttctaaatactcatagtttatgcttatcaatgagaaatagtttggtttagcca |
40087632 |
T |
|
| Q |
496 |
tggaattctagttggtgcctttgcatccttttggtataaatatagttgcatgatttattgaggatgcaaacaccgcgtcactggttacttaattactgcg |
595 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
40087631 |
tggaattctagttggtgcctttgcattcttttggtataaatatagttgcatgatttattgaggatgcaaacactgcgtcactggttacttaattactgcg |
40087532 |
T |
|
| Q |
596 |
cagatacattttctagtcgttctaaactgttaaaatcaagaagctattttttgtaataccatgattttgtaatgtggtttgtactgactttgatgt |
691 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
40087531 |
cagatacattttctattcgttctaaactgttaaaatcaggaagctattttttgtaatgccatgattttgtaatgtggtttgtactgacttttatgt |
40087436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 4e-86; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 172 - 565
Target Start/End: Complemental strand, 25465986 - 25465585
Alignment:
| Q |
172 |
gtttcgcagataaagttaaatcatagaaagttactggatggcatgatgcaaatatgtggagtacctcctgaaaagtttagaactatatgttcaagtattg |
271 |
Q |
| |
|
||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
25465986 |
gtttcacaggtaaagttgaatcacagaaagttactggatggcatgatgcaaatatgtggagtacctcctgagaagtttagaactatatgctcaagtattg |
25465887 |
T |
|
| Q |
272 |
acaagttagacaaacattcattcgaacagataagcaaataaatggttagggcatatgttgtttgtttctagtatttcctttataataatttttattatga |
371 |
Q |
| |
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|||||||||||||||| ||||| ||||||||||| ||| ||||||| ||||||||||||||||||||| |||| ||||| |||| ||||||||| | |
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| T |
25465886 |
acaagttagacaaacaatcatttgaacagataagaaaagaaatggtgagggcatatgttgtttgtttc---tattccctttgtaattgattttattataa |
25465790 |
T |
|
| Q |
372 |
ttgagcggaccaattttgttgtgcttaaactgttc-ttgacttgcacgttttga--attta---ttttatatttatt------ttctaaatactcatagt |
459 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||| ||| || || ||| || || || |||||| |||||| ||||||||||||||||| |
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| T |
25465789 |
ttgaacggaccaattttgttgtgcttaagctgttcattgtgttttacatttggaagatgtaggcttttatttttattctcatgttctaaatactcatagt |
25465690 |
T |
|
| Q |
460 |
ttatgc-ttatcaatgagaaatagtttggtttagccatggaattctagttggtgcctttgcatccttttggtataaatatagttgcatgatttattgagg |
558 |
Q |
| |
|
|||| | ||||||||| |||||||||||||||| ||| |||| ||||||||| || |||| ||||||| ||||||||||||||||||||||||| | |
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|
| T |
25465689 |
ttatcctttatcaatggtaaatagtttggtttagggatgaaatttaagttggtgctttagcattcttttgg--taaatatagttgcatgatttattgaag |
25465592 |
T |
|
| Q |
559 |
atgcaaa |
565 |
Q |
| |
|
||||||| |
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|
| T |
25465591 |
atgcaaa |
25465585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 172 - 566
Target Start/End: Original strand, 6756952 - 6757350
Alignment:
| Q |
172 |
gtttcgcagataaagttaaatcatagaaagttactggatggcatgatgcaaatatgtggagtacctcctgaaaagtttagaactatatgttcaagtattg |
271 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| |||| |||||||||||||| |
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|
| T |
6756952 |
gtttcacagataaagctgaatcatagaaagttactcgatggcatgatgcaaatatgtggagtacatcccgaaaagtttaggactacatgttcaagtattg |
6757051 |
T |
|
| Q |
272 |
acaagttagacaaacattcattcgaacagataagcaaataaatgg-------ttagggcatatgttgtttgtttctagtatttcctttataataattttt |
364 |
Q |
| |
|
|||||||||||||| | |||||| |||| ||||| ||| |||||| | ||| ||||||||||| ||||| | ||||||||||||| || ||| |
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| T |
6757052 |
acaagttagacaaaaaatcattcaaacatataagaaaagaaatggtgaggactgaggacatatgttgttcgtttc---tgtttcctttataattatattt |
6757148 |
T |
|
| Q |
365 |
attatgattgagcggaccaattttgttgtgcttaaactgttcttgacttgcacgttttgaatttattttatatttattttctaaatactcatagtttatg |
464 |
Q |
| |
|
||||||||||||| |||| || |||||||||||||| | |||| |||||| ||||||| | | |||||||| || |||| |||||||||| |
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| T |
6757149 |
attatgattgagcataccagttctgttgtgcttaaacgttccttgtgttgcacattttgaaagatgtatgcttttattttatacttacttatagtttatg |
6757248 |
T |
|
| Q |
465 |
c-ttatcaatgagaaatagtttggtttagccatggaattctag-ttggtgcctttgcatccttttggtataaatatagttgcatgatttattgaggatgc |
562 |
Q |
| |
|
| ||||||||| |||||||||||||||| ||||||| | || || | |||||||||| ||||||| | || | ||||||||||||||| ||||||| |
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|
| T |
6757249 |
ctttatcaatggtaaatagtttggtttagggatggaatacaagttttgcgcctttgcattcttttgg--tcaacactgttgcatgatttattaaggatgc |
6757346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 173 - 365
Target Start/End: Complemental strand, 25476363 - 25476173
Alignment:
| Q |
173 |
tttcgcagataaagttaaatcatagaaagttactggatggcatgatgcaaatatgtggagtacctcctgaaaagtttagaactatatgttc-aagtattg |
271 |
Q |
| |
|
|||| ||| ||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
25476363 |
tttcacaggtaaagttgaaccatagaaagttactcgatggcatgatgcaaatatgtggagtacctcctgaaaagtttaggactatatgttcgaagtattg |
25476264 |
T |
|
| Q |
272 |
acaagttagacaaacattcattcgaacagataagcaaataaatggttagggcatatgttgtttgtttctagtatttcctttataataattttta |
365 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||| ||| ||||||| | |||||||||||| |||| ||||||||||||||| ||||||| |
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|
| T |
25476263 |
ataagttagacaaacaatcattcgaacagataagaaaagaaatggtgcgtacatatgttgtttctttc---tatttcctttataattattttta |
25476173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 25466142 - 25466075
Alignment:
| Q |
36 |
ttatttgctataatttaaccttacaatatcattcatttgaatgtgtctggtgattgactgtagttttc |
103 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
25466142 |
ttatctgctataatttaaccttataatatcattcattttaatgtgtctggtgattgactgtacttttc |
25466075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 25476510 - 25476460
Alignment:
| Q |
43 |
ctataatttaaccttacaatatcattcatttgaatgtgtctggtgattgac |
93 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||| ||||||||||||| |
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|
| T |
25476510 |
ctataatttaaccttatagtatcattcatttgagtgtatctggtgattgac |
25476460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 25466252 - 25466196
Alignment:
| Q |
36 |
ttatttgctataatttaaccttacaatatcattcatttgaatgtgtctggtgattga |
92 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| ||| ||||| ||| ||||||| |
|
|
| T |
25466252 |
ttatttgctataatttaaccttttaatgtcattcagttggatgtgcctgctgattga |
25466196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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