View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19776_high_41 (Length: 295)
Name: NF19776_high_41
Description: NF19776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19776_high_41 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 20471852 - 20471590
Alignment:
| Q |
19 |
ggatgatctggaacgaaaaccgcaaccggtgacaacgctctatgagatctgtcaaaagaataggagaaaggttgagataagacaatcgaggaatggtgac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20471852 |
ggatgatctggaacgaaaaccgcaaccggtgacaacgctctatgagatctgtcaaaagaatgggagaaaggttgagataagacaatcgaggaatggtgcc |
20471753 |
T |
|
| Q |
119 |
aaaagcactgccagtgtctatgttgatggagagttggttgctactgcttgttctgatcagaaggacattgcaaggcttgatgctgcccagattgctgtgc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20471752 |
aaaagcactgccagtgtctatgttgatggagagttggttgctactgcttgttctgatcagaaggacattgcaaggcttgatgctgcccagattgctgtgc |
20471653 |
T |
|
| Q |
219 |
atgaactagaacgtgtattgcctgccactaccatgatgtccgaccgttgtaaaggccttgatg |
281 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20471652 |
atgaactagaacgcgtattgcctgccactaccatgatgtccgatcgttgtaaaggccttgatg |
20471590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 21 - 281
Target Start/End: Complemental strand, 44255803 - 44255543
Alignment:
| Q |
21 |
atgatctggaacgaaaaccgcaaccggtgacaacgctctatgagatctgtcaaaagaataggagaaaggttgagataagacaatcgaggaatggtgacaa |
120 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| |||||||||||||||||| |||||| ||| ||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
44255803 |
atgatctggaacaaaagccgcaaccggtgacaatgctctatgagatctgtcataagaatgggaaaaaggttgacataagacattcgaggaatggtgacaa |
44255704 |
T |
|
| Q |
121 |
aagcactgccagtgtctatgttgatggagagttggttgctactgcttgttctgatcagaaggacattgcaaggcttgatgctgcccagattgctgtgcat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
44255703 |
aagcactgccagtgtctatgttgatggagagttgtttgccgtggcttcctctgatcagaaggacattgcaaagcttgatgctgccaagagtgctgtgcag |
44255604 |
T |
|
| Q |
221 |
gaactagaacgtgtattgcctgccactaccatgatgtccgaccgttgtaaaggccttgatg |
281 |
Q |
| |
|
|||||||||||||| | ||| |||||||| || | ||||| |||||||||||| |||| |
|
|
| T |
44255603 |
aaactagaacgtgtactccctatcactaccacgacgcccgacaattgtaaaggcctagatg |
44255543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University